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ViWrap run --input_metagenome /home/fslcollab273/nobackup/archive/SALSA_Assembly/SALSA_ASSEMBLY/final_assembly.fasta \
--input_reads /home/fslcollab273/nobackup/archive/SALSA_Assembly/ALL_…
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`busco` 다운로드
```
(ont) cmkim@leafeon:/leafeon/analysis1/cmkim/abalone_gut_ont$ conda install -c bioconda busco
Collecting package metadata (current_repodata.json): done
Solving environment: unsu…
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## Overview
Graph stuff etc needed for next deployment.
## Sub-tasks
- [x] 1. debug `get_missing_in_between_nodes()` @Sigfried
- Missing node 17
- _Joe was originally gonna do but Siggie s…
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This is not a bug per se. but working with many sequences for the Topmed program we noticed that the QC for RNA Seq actually takes up significant resources (cloud or otherwise $$$) - e.g. RNASeQC (but…
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For D-profiles with PSAL values (i.e. not profile QC F), I expect that the ad_psal_adjustment_mean to be filled in with a value. However, for some wmo/cycle where definitely there should be a value, i…
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```
func TestQuery(){
var err error
c, err := config.New(config.WithConfigKey(key, secret, token))
c.EnableOvernight = true
var qc *quote.QuoteContext
qc, err = quote.NewFromCfg(c)
quotes…
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Use a regression model to investigate the relationship between `Library Type` and `Delta Reads`
- `Delta Reads = Total Reads - Targeted Reads`
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Add preview of alignment state/QC/mutations, similar to LANL HIV database
![image](https://github.com/loculus-project/loculus/assets/8379168/ad05132b-e361-4769-9e96-3fda21f2ab19)
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I am applying strict QC to all glycosylation/phosphorylation/glycation site dataset files, and the filtered out rows are stored in logs/*_proteoform_*.global.log files, and also I have created a scrip…