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Hi,
I'm getting an error when I try to predict RNA sequences longer than 600 bases:
Here is the error when I input sequences of 700 bases:
Welcome using UFold prediction tool!!!
Traceback (mos…
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Hi,
Thanks a lot for providing all the scripts. I would like to get the scvelo outputs with the spliced and unspliced read counts.(sci-fate_analysis/script_downstream_processing/scifate_RNA_veloci…
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NCBIGene:6052 doesn't have a label, but it does have one at https://www.ncbi.nlm.nih.gov/gene/?term=6052
It also has name and label information in `gene_info.gz`:
```
#tax_id GeneID Symbol Lo…
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Thank you very much for sharing. I found that some data was not sorted during the reproduction process. How do you handle the sorting of these data such as BMMC data how to sort?Can you provide a tuto…
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Sorting by `projectDescription` fails to properly sort all results.
```
$ http 'https://service.azul.data.humancellatlas.org/index/projects?size=30&catalog=dcp37&order=asc&sort=projectDescription&…
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I am interested in calling all the mismatches/conversions in my RNA modification dataset that is generated using Illumina TruSeq protocol (dUTP). I am using the JACUSA2 pileup method for this step. Si…
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```ts
if (isRna(value) || isSiren(value)) {
const identifierType = getIdentifierType(value) as
| StructureIdentifiersEnum.rna
| StructureIdentifiersEnu…
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Hello,
Question about 'RNA sequencing assay' (OBI:0001177) and 'RNA-seq assay' (OBI:0001271). In OBI, 'RNA-seq assay' is a subclass of 'RNA sequencing assay'. Are there examples of assays that fal…
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Hi,
I am running the tutorial.
I have been stuck on the function runGenePeakcorr for several days.
This is the output.
--------------------------------------------------------------------
Const…
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I was running DEnrichRPlot using my SCT assay after the PrepSCTFindMarkers. The data didn't quite make sense, so I reran it under the "RNA" assay. The data was drastically different (honestly made mor…