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Hello again!
I am trying to use Nano-Q for my SARS-CoV-2 sequences analysis, but when the process finishes, no files have been created and stored inside the "Results" directory. I am using the MN9089…
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Dear,
I have two questions regarding your tool:
I used the following command: `snakemake --config markers=ucsc dataset=mypool --cores 20 --resources mem_gb=500`
1. As you can see in the log, I …
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In order to better illustrate my feature request, I would like to begin with a situation that I (and probably many other people) meet:
For example, if I want to analyze the mutation profile of XBB.1.…
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Thank you for developing this incredible tool! I'm testing it out by reproducing some of the recombinant clades described in [pango-designation](https://github.com/cov-lineages/pango-designation). So …
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**Describe the bug**
I'm working with SARS-CoV-2. I only want to incorporate indels into a variant call file with `ivar variants` and consensus genome generated with `ivar consensus` when a certain f…
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From branch 7 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1771
LB.1.7+C22096T+S:R190S
Query: G22132T, C4784T,del21653,C22096T
No. of seqs: 11 (USA)
First: EPI_ISL_19177717, …
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I already mentioned this in https://github.com/andersen-lab/ivar/issues/85#issuecomment-858686771, but I am opening its own issue because I think this is a separate problem.
There is an inconsisten…
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Currently, the main page states this under Results for Genomics:
```
These lists are updated daily. There are 397 sites showing intra-host variation across 33 samples (with frequencies between 5% …
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From branch 2 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/2067
There seems to be a very recent new LF.7+S:A475V branch growing in Qatar.
@FedeGueli analyse:
> Qatar w…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1742
KP.2.3+S:S31del+A22080G(S:Q173R)
GISAID query: C22000A, A22080G,G25593T,-28714
Query for T22N:A22080G,C21627A,T3565C
Q…