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"This resource consists of mouse sperm lines for ENU-induced single-SNV mutations across more than 10,000 genes. In total there are over 250,000 SNVs that have been computationally predicted for effec…
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#### What data file(s) does this issue pertain to?
`cnv-controlfreec-tumor-only.tsv.gz`
#### What release are you using?
v13-v15
#### Put your question or report your issue here.
The st…
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Hi Dr. Feng, when detecting minor SNVs, the program runs but does show a message of "igda_pipe_detect_ont: line 114: [: missing `]'". I looked into line 114 of igda_pipe_detect_ont, and it calls a $au…
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Greetings,
Thank you so much for this amazing tool!
So I am checking the consistency between the SV calls after randomizing and splitting the reads into two equal datasets. Each dataset is of arou…
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Hi,
First of, great project! I was wondering whether a list of ASB SNVs (as is shown in figure 2C) is available or can be made available here? This will save me a lot of time re-running the analys…
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```
What steps will reproduce the problem?
1.jsm.py train joint_snv_mix_two mm10_mouse_ref.fa 129tumor.bam 129normal.bam
2.
3.
What is the expected output? What do you see instead?
[bam_header_read…
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Hello,
It seems that the vcf output file represents for the somatic SNVs of the single-cell WGS data only. How can I get all the SNVs including somatic and germline SNVs of single-cell data …
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I'm not sure if this is intentional (read: I miss something that I should provide somewhere), or if this is a bug.
I tried the same thing with other SARS reads, same behavior.
### What I did:
I s…
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After building the binaries from git we found this error on startup
org.exolab.castor.jdo.PersistenceException: Nested error: java.sql.SQLSyntaxErrorException: ORA-00933: SQL command not properly en…
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Hi,
since I can't find this option in the vignette, would it be possible to color 'multi-hit' rectangles with 2 triangles of different colors, each one representing the color of the respective type o…