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I'm running paired-end fastq files through BacPipe and they go through TrimGalore fine, but when passed to SPAdes, an error appears that says "SPAdes assembly not found". Here is the log file attached…
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There are a few ways the `quast` package could be improved:
- Separate build versus install. Opam has for some time supported a separate `install` phase, and install steps are recommended to go there.…
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Hi,
I am facing an issue with SPADE.driver, which throws a subscript out of bounds error:
```
Script:
fcs
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When running the SPADE.driver command I consistently receive the following error:
Error in x[[sprintf("flowCore_$P%sRmax", k)]] : subscript out of bounds
Please note that I did double-checked that …
ghost updated
10 years ago
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This might be a basic question: What makes a population SPADEable if you will? What kind of threshold or minimum cells/attributes need to be filled?
Cheers,
Miguel
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### Description of bug
Hi,
Our server has 512 GB of RAM and 256 cores. I have an issue shown in the spades.log. If I run spades with root privileges, the results are the same. There is a paired_0.…
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![Ace-Hearts](https://user-images.githubusercontent.com/18652395/103258263-7d22fe00-4962-11eb-8fef-2cdedb5e4372.png)
![King-Hearts](https://user-images.githubusercontent.com/18652395/103258264-7dbb94…
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Currently, spade PC builds builds are dependent on CoreAudio to emulate sound, which is an API exclusive to MacOS. This limits testing of audio to Apple computers, when windows & linux-based machines …
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### Description of feature
When running `metaSPAdes` as part of nf-core/mag, the first step is the read correction followed by the actual assembly steps. When using the sensible default resource sett…