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[@dosumis this ticket makes points that you have been making for a decade, apologies if this duplicates an existing ticket, I didn't see one and thought to start one fresh]
In general CL follows se…
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Hi,
Thanks for developing this awesome package. I'd like to study ligand and receptor pairs in experimental and control groups. When I visualize upregulated signaling ligand-receptor pairs using a bu…
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subsets are widely used in the OBO world, e.g.
```
[Term]
id: GO:0000156
name: phosphorelay response regulator activity
namespace: molecular_function
def: "Responds to a phosphorelay sensor to initia…
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Hi,
I am attempting Ligand-Receptor cell-cell communication data analysis. I cannot import the txt file that is from the giotto package:
```
` > LR_data list.files(system.file("extdata", pack…
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Hi! I'm new to CellChat (just installed recently), but I can't seem to make it work.
A bit of context:
I have an h5ad data object from 10x scRNA experiments (batch correction for multiple samples).…
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This is a list of suggested new categories to add to the database. If you have any other suggestions please comment below. Keep in mind that it is a significant amount of work to recategorise the tool…
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I met a problem when using CellChat. I wanted to know whether the CLEC pathway existed in my data. First, I analyzed the expression of the ligand and receptor of this pathway in my data and found that…
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Hi, thanks for this nice tool, can you give some suggestions about analysis on other species, like Macaque or Rat? I this maybe we need to replace gene names of human by homologous gene names in Macaq…
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Following up on the discussion in #17977
This is the plan for 'detection of substances'
- [ ] detection of oxygen (12 EXP) why not use a receptor or signalling pathway?
-> suggest obsoletion, …
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Since CENP-A is not loaded in mitosis, it should be possible to add "during_interphase" to all of these.
https://www.pombase.org/term/GO:0034080