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What is the difference between this and Sarek pipeline?
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General description of the project:
- MinION sequencing
- maintenance host vs. incidental hosts
- comparative study
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I am trying to run the pipeline on some targeted amplicon sequencing by using the recommended settings (by using eval as target eval and providing a .bed file).
The pipeline runs fine if I use
sn…
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I am running CNVkit using two options. First, I am using three samples as a reference and second, I am running it without any reference. However, in each case, the sex identified is opposite. How to d…
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When I ran Msisensor， I found the results are quite different between using the deduplicated bam and not deduplicated bam. I wonder which bam shoud be used , the deduplicated bam or not deduplicated …
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Hi,
I have a few questions about the software.
1. I attempt to use siRNA-seq to generate the DGE result. Will different sequencing methods affect the data interpretation and accuracy?
2. I am …
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### Description of feature
The DNPM KDS draft includes a set of clinically relevant scores which can be calculated and derived from data generated during alignment and variant calling. As a long-term…
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If I have files output from AA and AC, is there a way for me to experiment with the cycle view /genome browser to investigate potential larger structures formed from my cycles/paths? Would be good if …
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**Is your feature request related to a problem? Please describe.**
We can currently (only) provide a PED file for describing a case. It would be very helpful to augment this as we currently alrea…