nf-core exoseq issues - Githubissues

nf-core / exoseq

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issues

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Difference of pipelines

#40 kokyriakidis opened 5 years ago
2
Prepare for nf-core sync

#39 sven1103 opened 5 years ago
0
remove duplicate help + fix some alignment

#38 maxulysse closed 5 years ago
1
update dependencies

#37 maxulysse closed 5 years ago
0
Update Dependencies

#36 apeltzer closed 5 years ago
0
Singularity Support

#35 apeltzer opened 5 years ago
0
Add Travis CI Testing to ExoSeq

#34 apeltzer opened 5 years ago
1
Trimgalore fuse fastqc

#33 apeltzer closed 5 years ago
1
Include Switch to skip GenotypeGVCFs ?

#32 apeltzer opened 5 years ago
0
Merge Mapping BAM and Samtools sort

#31 apeltzer closed 5 years ago
0
Replaced old $process syntax withName syntax

#30 apeltzer closed 5 years ago
0
AWSbatch profiles added

#29 apeltzer closed 5 years ago
0
Get rid of $processName stuff and use withname syntax

#28 apeltzer closed 5 years ago
1
Add AWSBatch Profiles

#27 apeltzer closed 5 years ago
0
Add a DOI on first release

#26 apeltzer opened 5 years ago
0
Removed problematic local executor specification

#25 alneberg closed 5 years ago
6
Update gitter channel with the exoseq one

#24 maxulysse closed 6 years ago
1
Parallelization for Haplotypecaller

#23 veeravalli closed 5 years ago
3
Configuration - nest assemblies and references

#22 marchoeppner closed 5 years ago
1
Split MultiQC output into fastq, library and sample

#21 marchoeppner opened 6 years ago
0
Enable multi-lane support

#20 marchoeppner opened 6 years ago
4
Add HSMetrics

#19 marchoeppner opened 6 years ago
0
Switch to a CSV/TSV based input

#18 marchoeppner opened 6 years ago
6
Remove support for genome processing

#17 marchoeppner closed 5 years ago
2
Merge BWA and Samtools steps

#16 marchoeppner closed 5 years ago
1
Move FastQC into trimGalore

#15 marchoeppner closed 5 years ago
2
Make CRAM default alignment format

#14 marchoeppner closed 5 years ago
2
Travis Tests for ExoSeq

#13 apeltzer closed 5 years ago
1
Software versions in single process

#12 apeltzer closed 6 years ago
1
Get it all nextflowy

#11 apeltzer closed 6 years ago
0
Evaluate / Integrate Googles DeepVariant Caller?

#10 apeltzer closed 5 years ago
2
Joint Discovery merge with main script

#9 apeltzer opened 6 years ago
2
Collect software versions in a single process

#8 apeltzer closed 6 years ago
0
Move kits to a base params definition, similar to igenomes

#7 apeltzer closed 5 years ago
3
Automatically check Reference Files are compatible

#6 apeltzer closed 5 years ago
1
Provide additional nf script for preparing Exome-Kit files

#5 apeltzer opened 6 years ago
0
Add Travis Tests for ExoSeq

#4 apeltzer opened 6 years ago
0
Support for mixed capture methods

#3 apeltzer opened 6 years ago
0
Updated Documentation

#2 apeltzer closed 6 years ago
0
Some changes to follow more nf-core rules in NGI-ExoSeq

#1 ewels closed 6 years ago
1