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Hi and hope all is well!
I wanted to inquire about the conda installation timeline. I know that PPR-Meta is not conda-installable which is why you need to withhold the conda implementation. I want…
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Hi,
i have seen that to run basta after running the diamond program there, the database used for running basta is same as the uniport trembl which was used by diamond or is it a different database…
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The current UI for filtering taxonomic classifications doesn't group the elements according to the taxonomy's hierarchy. This makes it hard to understand how the taxonomy is organized. One way to fix …
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It would be nice to be able to look for collections containing a particular group like `Aves`. Ideally we would have a way to search directly the taxonomic coverage field, but in the meanwhile could t…
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https://sp2000.github.io/colplus/api/api.html#resource-15
api says else
```
{
"code": 400,
"message": "query param issue must be one of [UNPARSABLE_NAME, PARTIALLY_PARSABLE_NAME, UNPARSABLE_AUTH…
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Disbiome database is a collection of microbiome compositional effects related to human disease
https://disbiome.ugent.be/home
Here is an example record for a disbiome entry:
https://disbiome.ug…
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# Expected Behavior
I have provided the below command
**mmseqs expandaln ./base/qdb ./uniprot/uniprotdb.index ./base/res ./uniprot/uniprotdb.index ./base/res_exp --db-load-mode 2 --expansion-mode…
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**Is your request related to a specific disease? Please describe.**
'common cold' (DOID:10459) and 'scarlet fever' (DOID:8596) are not properly classified in the infectious disease branch (should be …
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I have noticed that some taxa names contain unusual characters that don't appear in the original records. Below are a few examples where R has written in an inverted breve above a capital A where no …
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I have read a workflow (https://f1000research.com/articles/5-1492/v2). However, I just have relative abundance data for each species. Should I make it as the tax_table in phyloseq object?