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https://mp.weixin.qq.com/s/R85qDRj8EuuQ1eSSjsWjXQ
ixxmu updated
2 years ago
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I think for completeness we may want to add a couple of keywords to our controlled vocabulary for `keywords_study`
Currently we have:
- contains_ig
- contains_tcr
- contains_single_cell
- con…
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While working on an AIRR exporter for single cell, a few points have come up in between on how to represent some of the cell properties, I was hoping we can get some feedback on how to address these i…
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## 🐛 Bug
I am trying to run geneUsage on a MiXCR dataset that I imported consisting only of IGH chains. I can run it to generate a histogram of v gene usage (using "hs.ighv") but when I try to look a…
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https://mp.weixin.qq.com/s/rUx5CfCMC_x-oXFooD0lbw
ixxmu updated
2 years ago
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From a comment by Mathieu of vidjil group:
In particular, we used the `duplicate_count` key to describe the number of reads gathered in each clone, as you suggested us in your previous email. To en…
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Greetings!
Great tool to help predict the TCR-pMHC bindings although, is there any way to speed up the encoding step? Since I understand the aim of this tool is to predict how well your TCR reperto…
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Hi authors,
Love CONGA, super interesting innovative idea.
I work with a lot of bulk repertoire seq and would love to start trying to incorporate some of the biology you touched on when you iden…
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Hello and thank you very much for developing this wonderful package!
I was trying to load multiple TCR filtered_annotations.csv files with repLoad function of this package. Prior to it I was openin…
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https://mp.weixin.qq.com/s/-VK20oj473Kz7TUHVuaUnA
ixxmu updated
2 years ago