airr-community airr-standards issues

airr-community / airr-standards

AIRR Community Data Standards

https://docs.airr-community.org

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issues

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curie resolve, handle undefined, fix deprecate bug

#792 schristley closed 2 weeks ago
0
exclude deprecated

#791 schristley closed 2 weeks ago
0
Should `TimePoint` and `TimeQuantity` objects be merged?

#790 ustervbo opened 3 weeks ago
0
Inconsistency in required elements and properties in `RearrangedSequence` and `UnrearrangedSequence`

#789 ustervbo opened 1 month ago
0
Incompatibility with Python 3.12

#788 ddiez closed 4 weeks ago
6
python error when using airr.read_rearrangement with gzip file

#787 schristley opened 1 month ago
1
airr-js library for v1.5

#786 schristley closed 2 months ago
0
JavaScript Errors

#785 rck3225 opened 2 months ago
0
Merge changes for issue 781

#784 bcorrie opened 2 months ago
0
version number in spec files is not correct for 1.5.x

#783 schristley closed 4 weeks ago
20
Validation of logical fields in R

#782 javh opened 2 months ago
0
How do I capture known antigen/epitope reactivity to AIRR objects (Rearrangement/Cell)

#781 bcorrie opened 3 months ago
18
Add verification for Manifest to AIRR libraries

#780 bcorrie opened 3 months ago
0
Consider new event model for AIRR

#779 bcorrie opened 3 months ago
0
Clone-schema-updates

#778 scharch opened 3 months ago
4
Remove "experimental" designation from Alignment schema?

#777 scharch opened 3 months ago
1
Restructuring of Cell

#776 javh closed 2 months ago
14
Add consistency checks to make sure unit test data are identical between R and python

#775 javh opened 4 months ago
3
specification of AA physiochemical properties of the CDR3

#774 schristley opened 4 months ago
0
RepertoireGroup updates for v2.0, take two

#773 scharch opened 4 months ago
4
AIRR could use a specification of mutations counts/frequencies and maybe aggregates

#772 schristley opened 4 months ago
1
reference libraries do not provide access to CURIEMap and InformationProvider for CURIE resolution

#771 schristley opened 4 months ago
2
Change germline_set_ref to be a CURIE

#770 bcorrie opened 4 months ago
11
Add a "nonphysical" keyword to Rearrangement and Cell

#769 scharch opened 4 months ago
7
Re-visit implementation decisions around `Cell` object

#768 bussec closed 2 months ago
30
Initial moves to OpenAPI v3

#767 schristley opened 4 months ago
8
merge in master

#766 schristley closed 4 months ago
0
deprecate OpenAPI 2 spec for ADC API?

#765 schristley opened 4 months ago
4
async api documentation

#764 schristley closed 3 months ago
0
Overall documentation fixes for v2.0 release

#763 bcorrie closed 3 months ago
2
Add routine to validate class of an ontology object

#762 bussec closed 4 months ago
0
R library validation does not handle properties with ontologies correctly

#761 bussec closed 4 months ago
0
ADC API versions are confusing, and not right for AIRR v1.4.1 and v1.5.0 releases

#760 schristley closed 4 months ago
7
extensions property

#759 schristley closed 4 months ago
4
Initial moves to OpenAPI v3

#758 schristley closed 4 months ago
6
Initial moves to OpenAPI v3

#757 schristley closed 4 months ago
0
Do we need adc_keywords

#756 bcorrie opened 4 months ago
1
Add /reactivity endpoint to ADC API

#755 bussec closed 4 months ago
1
Should we use "Reusable Enums" for the v3 Schema?

#754 bussec opened 4 months ago
1
Add iRPlus Stats API into ADC formal API

#753 bcorrie opened 4 months ago
4
v2.0 ADC API doc changes

#752 bcorrie closed 4 months ago
4
Review docs for queries against array objects

#751 bcorrie closed 4 months ago
2
MiAIRR Compliance Flag

#750 jday1 closed 2 months ago
8
Addition of Diagnosis TimePoint

#749 bcorrie closed 4 months ago
16
RepertoireGroup development for v2.0

#748 bcorrie closed 4 months ago
9
Add adc-api-optional to AIRR extension attributes

#747 bcorrie closed 4 months ago
6
Change pub_ids to be array of CURIEs

#746 bcorrie closed 4 months ago
3
Review of AIRR-Standards documentation

#745 ustervbo opened 4 months ago
2
updated versioneer from 0.18 to 0.29

#744 ssnn-airr closed 4 months ago
4
Clarification on umi_count/duplicate_count/consensus_count

#743 grst closed 5 months ago
6