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### Description of the bug
Hi all,
I am running BTK as a nested pipeline in ASCC using the odCymConc1_PRIMARY pre-decontaminated genome. However, it crashed with the following:
```
Command e…
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GitHub offers a nice tsv table preview, but this only works for well-behaved files.
For example, all rows need to have the same number of columns.
This is not always the case. See, for example,
ht…
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Hi,
First of all, thank you for such a wonderful software!
I have created a quality metric toolbox (bombcell) that interacts with phy by outputing a series of cluster_[quality_metricx].tsv fil…
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I could not find a script that generates - retrieved_trials.json
Imagine I have a brand new dataset/new and have underlying
```
/qrels/tests.tsv - empty
/corpus.jsonl - populates as per …
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Hello,
I ran the following commands on my data:
`phava locate -i genome.fasta -d out_dir`
`phava create -d out_dir`
`phava ratio -r long_reads.fastq -d out_dir`
The output .tsv file was emp…
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Hi all,
I had a quick question regarding how the calculation of protein coverage is performed in the `protein.tsv` report. I was trying to compute protein coverage by using the results that are in …
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For the munge -C colheaders.tsv option, what is the format of the colheaders.tsv file? The -c options does not include ourput from GENESIS (https://github.com/UW-GAC/GENESIS).
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Begun for v2; needs to be ported over
- [x] LP-TSV
- [x] LPF
- [x] LP-TSV testing
- [x] LPF testing
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Hello, can you add input and output options. Enter hex_ privatekeys. tsv to Bitcoin address. tsv?
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https://github.com/BrentLab/yeastdnnexplorer/blob/93083c32ac365ebab1121a419ba0cd3475522c83/yeastdnnexplorer/interface/AbstractRecordsAndFilesAPI.py#L211
This needs to be corrected in the database e…