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sanger-tol
/
blobtoolkit
Nextflow pipeline for BlobToolKit for Sanger ToL production suite
https://pipelines.tol.sanger.ac.uk/blobtoolkit
MIT License
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Make BUSCO annotations an optional input
#102
muffato
opened
2 weeks ago
0
Separate BUSCO pipeline ?
#101
muffato
opened
2 weeks ago
0
CI branch PR checking
#100
gq1
closed
3 weeks ago
1
Publish peripheral data as well, even if we don't use it ourselves
#99
muffato
closed
1 day ago
7
Overall clean up
#98
muffato
closed
1 month ago
4
Support draft assemblies
#97
muffato
opened
1 month ago
3
Increase CI test resource
#96
gq1
closed
1 month ago
5
Fixes for production, March 2024
#95
muffato
closed
2 months ago
1
summary.json missing from the output blobdir
#94
muffato
closed
2 months ago
0
Large Tower Compute Env for CI jobs on farm
#93
gq1
closed
4 months ago
2
Release 0.3
#92
muffato
closed
4 months ago
2
error with FASTAWINDOWS process
#91
abdo3a
closed
4 months ago
10
Updates in place and broken Nextflow job cache
#90
muffato
closed
2 months ago
0
Missing BUSCO results
#89
muffato
closed
5 months ago
0
v0.3 - Pipeline now validated on five real genomes
#88
muffato
closed
4 months ago
7
Release 0.2.0
#87
priyanka-surana
closed
6 months ago
1
instructions to run btk in prod
#86
priyanka-surana
closed
6 months ago
1
Prod release v0.2.0
#85
priyanka-surana
closed
6 months ago
17
Prepare genome subworkflow
#84
priyanka-surana
closed
8 months ago
1
Optional alignment subworkflow
#83
priyanka-surana
closed
8 months ago
3
Test ci
#82
muffato
closed
9 months ago
4
Blastn
#81
alxndrdiaz
closed
6 months ago
3
Pipeline configuration with a Yaml file
#80
muffato
closed
6 months ago
3
Add optional read mapping subworkflow
#79
priyanka-surana
closed
6 months ago
0
Optional readmapping subworkflows
#78
priyanka-surana
closed
11 months ago
0
Improved generation of the summary Yaml file
#77
priyanka-surana
opened
1 year ago
1
Delete config.yml
#76
priyanka-surana
closed
1 year ago
1
Basal lineage configuration
#75
muffato
closed
1 year ago
1
diamond blastx subworkflow
#74
alxndrdiaz
closed
6 months ago
7
setting for v0.2.0
#73
priyanka-surana
closed
1 year ago
1
Merging main into dev
#72
priyanka-surana
closed
1 year ago
1
update images
#71
priyanka-surana
closed
1 year ago
2
For release
#70
priyanka-surana
closed
1 year ago
2
Release ready
#69
priyanka-surana
closed
1 year ago
1
busco_sequences directory - no tar.gz !
#68
muffato
closed
1 year ago
2
Subworkflow view
#67
priyanka-surana
closed
1 year ago
10
BTK summary
#66
priyanka-surana
closed
1 year ago
1
Diamondblastx
#65
priyanka-surana
closed
1 year ago
0
In progress
#64
priyanka-surana
closed
1 year ago
0
View2
#63
alxndrdiaz
closed
1 year ago
2
Update view
#62
alxndrdiaz
closed
1 year ago
1
Formatting try 2
#61
priyanka-surana
closed
1 year ago
9
Formatting
#60
priyanka-surana
closed
1 year ago
1
Update sangertest.yml
#59
priyanka-surana
closed
1 year ago
1
add diagram
#58
zb32
closed
1 year ago
2
Cleanup
#57
priyanka-surana
closed
1 year ago
7
decision records
#56
priyanka-surana
closed
1 year ago
1
remove parameters
#55
zb32
closed
1 year ago
1
Remove `parameters.md`
#54
priyanka-surana
closed
1 year ago
0
Clean up docs
#53
priyanka-surana
closed
1 year ago
0
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