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sanger-tol
/
blobtoolkit
Nextflow pipeline for BlobToolKit for Sanger ToL production suite
https://pipelines.tol.sanger.ac.uk/blobtoolkit
MIT License
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Update PULL_REQUEST_TEMPLATE.md
#52
priyanka-surana
closed
1 year ago
0
add instructions for creating databases
#51
sujaikumar
closed
1 year ago
1
create blobdir
#50
zb32
closed
1 year ago
2
Clean up
#49
priyanka-surana
closed
1 year ago
0
Workflow diagram
#48
priyanka-surana
closed
1 year ago
0
VIEW subworkflow
#47
alxndrdiaz
closed
1 year ago
3
Ci tests
#46
zb32
closed
1 year ago
8
window_stats
#45
zb32
closed
1 year ago
1
BLOBTOOLS subworkflow: GENERATE_CONFIG module
#44
alxndrdiaz
closed
1 year ago
7
only create conda env when profile enabled.
#43
gq1
closed
1 year ago
1
Fix config
#42
muffato
closed
1 year ago
2
Coverage
#41
zb32
closed
1 year ago
0
Count busco genes
#40
zb32
closed
1 year ago
3
Count buscogenes
#39
zb32
closed
1 year ago
0
Coverage tsv
#38
zb32
closed
1 year ago
4
Busco dev
#37
alxndrdiaz
closed
1 year ago
14
Busco subworkflow clean
#36
alxndrdiaz
closed
1 year ago
27
Fix dev
#35
zb32
closed
1 year ago
0
Fastawindows
#34
zb32
closed
1 year ago
0
Pipeline update
#33
zb32
closed
1 year ago
2
Mosdepth Subworkflow
#32
zb32
closed
1 year ago
4
blastn subworkflow
#31
alxndrdiaz
closed
1 year ago
0
diamond_blastx subworkflow
#30
alxndrdiaz
closed
1 year ago
10
removed unused line to fix compilation error
#29
alxndrdiaz
closed
1 year ago
3
Busco subworkflow
#28
alxndrdiaz
closed
1 year ago
18
blobltoolkit i/o subworkflow
#27
alxndrdiaz
closed
1 year ago
6
i/o automate input subworkflow
#26
alxndrdiaz
closed
1 year ago
0
Automate input normalisation
#25
muffato
closed
1 year ago
1
nf-core module: goat/taxonsearch
#24
alxndrdiaz
closed
1 year ago
1
subworkflow: view
#23
alxndrdiaz
closed
1 year ago
0
subworkflow: blobtools
#22
alxndrdiaz
closed
1 year ago
0
subworkflow: blastn
#21
alxndrdiaz
closed
6 months ago
0
subworkflow: diamond_blastx
#20
alxndrdiaz
closed
6 months ago
0
subworkflow: diamond_blastp
#19
alxndrdiaz
closed
1 year ago
0
subworkflow: window_stats
#18
alxndrdiaz
closed
1 year ago
0
subworkflow: cov_stats
#17
alxndrdiaz
closed
1 year ago
0
subworkflow: busco
#16
alxndrdiaz
closed
1 year ago
0
subworkflow: chunk_stats
#15
alxndrdiaz
closed
1 year ago
0
Unit testing - sample databases
#14
sujaikumar
closed
1 year ago
2
Pipeline documentation
#13
alxndrdiaz
closed
1 year ago
1
Large test
#12
alxndrdiaz
closed
6 months ago
1
Medium test
#11
alxndrdiaz
closed
6 months ago
1
Small test
#10
alxndrdiaz
closed
1 year ago
2
nf-core pipeline: blobtoolkit
#9
alxndrdiaz
closed
1 year ago
0
nf-core module: blobtools2
#8
alxndrdiaz
closed
1 year ago
0
containers: blobtools2
#7
alxndrdiaz
closed
1 year ago
1
nf-core module: pysam
#6
alxndrdiaz
closed
2 years ago
2
nf-core module: blast/windowmasker
#5
alxndrdiaz
closed
1 year ago
1
nf-core module: entrezdirect/xtract
#4
alxndrdiaz
closed
1 year ago
3
nf-core module: entrezdirect/esummary
#3
alxndrdiaz
closed
1 year ago
2
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