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**Background**
There are 4 types of controls in the Varchamp data: transfection control, positive control (morphology), positive control (localization), and negative control (morphology). We are revi…
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Hi ..
I have Nanopore cdna reads and tried variant calling for this data. One set was analysis with reads without error correction where i see a lot of variants (~500). Further after doing error corr…
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Hello!
We are using version 1.1.0 of OMIM module in our analysis of the WGS data.
There is a problem that a very small percentage of variant in the sqlite file had a link to OMIM database. But du…
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### Description
fiori-tools-proxy afterMiddleware should have fiori-tools-preview middleware. Otherwise, it does not work properly and produces correct changes with the reference to the app varia…
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On the LANL Venado machine, Linux ARM/Grace-Hopper architecture, whether using clang 18 (`Cray clang version 18.0.0`) or gcc-13 (`13.2.1`) compiler toolchain (both with `nvcc` from CUDA 12.5), the sam…
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Hi,
I was able to get the trinity variant calling script to run on my HPC but I think now looking into it, it only ran one of the samples when I used this script, I only see information for the sam…
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Hello, we would like to analyze SNPs under selection across different populations (in our case, we have six), and the sample sizes (belove) provided are just examples. Unfortunately, we keep encounter…
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Comparing
https://github.com/PacificBiosciences/trgt/blob/main/repeats/pathogenic_repeats.hg38.bed
to
https://github.com/broadinstitute/str-analysis/blob/main/str_analysis/variant_catalogs/varia…
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### Current Behavior
Hello,
We have NVD + GHSA configured as vulnerability sources within our ODT instance.
Since we activated the GHSA we were used to get most of vulnerabilities twice (once with t…
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Lirical requires Exomiser variant database to run analysis with VCF file, but there are multiple variant database releases out there. We need a way to check that LIRICAL will work with a given databas…
ielis updated
7 months ago