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PacificBiosciences
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trgt
Tandem repeat genotyping and visualization from PacBio HiFi data
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Large expansions without reads covering the entire repeat region
#44
gabeng
opened
3 weeks ago
4
about trgt plot on complex tr
#43
WeiCSong
opened
3 weeks ago
3
ignore custom keys in catalog name field
#42
bw2
opened
1 month ago
0
validate command should print something if a catalog passes validation
#41
bw2
closed
2 weeks ago
2
support for bgzipped catalogs
#40
bw2
closed
2 weeks ago
3
trgt merge - skip problematic loci
#39
hdashnow
closed
1 month ago
4
Soft-clipped reads in genome alignment are discarded
#38
MaestSi
closed
1 month ago
11
about the process method of adotto TR annotation file
#37
WeiCSong
closed
3 weeks ago
1
CLI flag to disable spanning reads BAM generation
#36
SHuang-Broad
closed
2 weeks ago
3
update bioconda package
#35
fo40225
closed
5 days ago
1
Recommended repeat definition file to use
#34
gevro
closed
3 months ago
3
Multiple Tandem Repeat Motif
#33
MKaandemir
closed
3 months ago
7
de novo repeat motifs
#32
MKaandemir
closed
3 months ago
6
could the TRGT work with assembly data derived from HiFi reads?
#31
WeiYang-BAI
opened
4 months ago
1
Wrong Short Tandem Repeat size in vcf file
#30
pailloufat-stack
opened
5 months ago
4
Adding repeat number and confidence interval to TRVZ
#29
lasseringstedmark
opened
5 months ago
2
reference coordinates of pathogenic repeats
#28
bw2
opened
6 months ago
2
TRVZ v0.8.0 hmm error on some repeats
#27
zbonnstetter
closed
4 months ago
6
Parsing MC counts vs. MS intervals in VCF rows with multiple motifs
#26
bw2
opened
6 months ago
4
No genotype calls for well-covered locus
#25
jlac
opened
8 months ago
4
question regarding understanding trvz plot
#24
Tianyibian
opened
9 months ago
1
VCF Spec
#23
themkdemiiir
opened
9 months ago
4
question about Repeat definition files
#22
crazysummerW
opened
10 months ago
4
Why is detecting and genotyping Short Tandem Repeats (STRs) challenging?
#21
CSU-KangHu
opened
10 months ago
3
Copy number ouput in the MC Tag in Info column
#20
Lionward
opened
10 months ago
1
Not capturing ZNF713 after changing coordinates from hg38 to hg19
#19
Tianyibian
opened
10 months ago
8
VCF Header Columns sample_id
#18
themkdemiiir
closed
9 months ago
6
Triple or quadruple reads stacked in TRVZ images?
#17
Jolleboll
opened
10 months ago
1
VCF rows without genotype
#16
splaisan
closed
11 months ago
3
runtime error (thread '<unnamed>' panicked at 'called `Result::unwrap()`)
#15
splaisan
closed
12 months ago
5
repeat_catalog.hg38.bed to JSON format
#14
YaCui
opened
1 year ago
0
How TRGT determine whether TR is homozygous or heterozygous for a diploid sample?
#13
PengJia6
closed
1 year ago
4
hg19bed
#12
ghost
opened
1 year ago
0
Short read data compatibility
#11
JannahS
closed
2 weeks ago
4
Rust - thread panic at byte index ###
#10
stacy-l
closed
2 weeks ago
2
MC on the reference allele
#9
hdashnow
opened
1 year ago
0
Read-level data
#8
hdashnow
closed
2 weeks ago
0
Pathogenic repeats file
#7
Madelinehazel
closed
1 year ago
3
TRGTdb
#6
ACEnglish
closed
3 months ago
2
thread 'main' panicked at 'assertion failed
#5
Nehir291
closed
1 year ago
3
rust panic byte index
#4
ljmills
closed
1 year ago
5
Repeats
#3
hchetia
closed
1 year ago
2
thread 'main' panicked at 'called `Option::unwrap()`
#2
asuresh2
closed
2 years ago
3
rust panic
#1
hdashnow
closed
2 years ago
9