-
-
Compare YAHS, SALSA, GreenHill, Juicer assemblies
- Quest basic metrics
- Syntenys
- Centromeres, Telomeres
- Still figuring out how to best compare them?
-
I was able to successfully use the pipeliine to output in `out/juicebox_input/out_JBAT.assembly` and `out_JBAT.hic` files and then subsequently make the required changes in Juicebox.
Following the …
-
Set up Arima and YAHS for scaffolding, since Juicer results did not work.
-
Hello,
I am running BRAKER 3.0.6 on a HPC cluster using the Singularity image file. I am using only protein evidence. Here is how I am calling BRAKER.
```
BRAKER_SIF="/projects/academic/tkrabbe…
-
Hi Diego,
Over here at the CNAG, as you know, we currently assemble genomes using ONT technology and I have had a bit of trouble getting your report to work for us. One issue we have is that since …
-
- Merge files in jobfs instead of keeping them on disk (for things like HifiASM)
-
Can yahs be used for prefix.p_utg.gfa assembled with Hifiasm or low heterozygosity (0.17%) genomes assembled with nextdenovo?
Looking forward to your reply, thank you very much!
-
Juicer running on Bassiana HifiASM assembly now.
-
### Ask away!
Hi, thanks for the great workflow! I have a question about the BAM file generated from wf-pore-c. I am not sure if this is a bug, because everything runs without any errors, but I am …