epi2me-labs wf-pore-c issues

epi2me-labs / wf-pore-c

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demo data request

#84 biozzq opened 2 weeks ago
2
run command again, but when I ran it again, the bug appeared

#83 wangguiqian opened 1 month ago
9
Offline operation wf-pore-c

#82 Blosers opened 1 month ago
3
wf-pore-c no work

#81 JWJ13164328557 closed 1 month ago
1
bamstats invalid option

#80 xinrjiang opened 1 month ago
5
wf-pore-c pipeline not working

#79 omegabappa opened 1 month ago
2
Process `POREC:pairsToCooler (93)` terminated with an error exit status (137)

#78 webgbi opened 1 month ago
3
Sequential pairing or all-to-all pairwise pairing before conversion to .hic?

#77 Sean-McGinty opened 2 months ago
1
--chunk_size parameter of the run command again, but when I ran it again, the bug appeared

#76 wangguiqian closed 1 month ago
1
I cannot execute wf-pore-c

#75 Blosers opened 2 months ago
3
离线使用wf-pore-c

#74 Blosers opened 2 months ago
9
git clone

#73 Blosers opened 2 months ago
3
--chunk_size parameter of the run command again, but when I ran it again, the bug appeared

#72 wangguiqian closed 3 days ago
11
Is it possible to ignore unmapped short monomers within concatemers to not interrupt interaction information?

#71 Henrikkoe opened 3 months ago
2
error [nextflow.exception.ProcessFailedException]: Process `POREC:merge_pairs (1)` terminated with an error exit status (1)

#70 wangguiqian closed 3 days ago
7
Try to use the wf-poreC pipeline with the 3D-DNA scaffolder but missing mandatory merged_nodups.txt

#69 avera1988 opened 3 months ago
6
Incorrect fastq chunk with sample_sheet input

#68 LuJiansen closed 2 months ago
3
Filtering the bam of mapped fragments by MAPQ

#67 Sean-McGinty closed 3 days ago
1
步骤报错

#66 Blosers closed 3 days ago
1
How to run this pipeline without internet and root permission?

#65 gotouerina closed 2 months ago
3
Failed to pull singularity image

#64 wangguiqian closed 4 months ago
15
Extracting methylation data from aligned BAMs

#63 jameson-orvis closed 3 days ago
16
how to run the workflow in HPC with Slurm scheduler and singularity

#62 dnaase closed 5 months ago
1
Error in test run

#61 dnaase closed 5 months ago
2
.pairs file full of empty or unaligned reads

#60 hackkr closed 4 months ago
10
Execute pipeline without nextflow

#59 arslan9732 closed 6 months ago
1
--sample alias not reflected in output file names

#58 hackkr closed 6 months ago
1
How to run the pipeline in local machine with read data

#57 ld9866 closed 4 months ago
3
wf-pore-c-demo results confirmation

#56 xinrjiang closed 3 months ago
2
Process `POREC:createBed (1)` terminated with an error exit status (137)

#55 kubek78 closed 6 months ago
4
`workflow-glue: command not found` when running pore-c demo with singularity.

#54 hackkr closed 7 months ago
1
Is Pore-C data suitable for chromosome mounting in homologous polyploids?

#53 GLking123 closed 7 months ago
2
Question about Creating Haplotype-Specific Hi-C Links and Methylation Levels

#52 jjuhyunkim closed 6 months ago
6
BED file did not store the same information as BAM

#51 gotouerina closed 3 months ago
10
Could I choose output?

#50 gotouerina closed 7 months ago
3
Process `POREC:to_pairs_file` terminated with an error exit status (137)

#49 Huan-Wei-hias closed 7 months ago
11
Duplicate results in bam？

#48 gotouerina closed 6 months ago
3
How to get percentage of Pore-C DNA?

#47 jameson-orvis closed 8 months ago
2
How to deal with too many pair files?

#46 gotouerina closed 4 months ago
9
digest_align_annotate step very slow and low cpu usage

#45 ywang285 closed 8 months ago
7
java seems to get to little memory and crashes

#44 ahcm closed 9 months ago
1
Process `POREC:makeReport` terminated with an error exit status (137)

#43 Huan-Wei-hias closed 10 months ago
2
.command.sh: line 2: 33 Killed minimap2 -x map-ont -d "reference.fasta.mmi" "reference.fasta"

#42 socialhang closed 4 months ago
8
.command.sh: line 2: 33 Killed minimap2 -x map-ont -d "reference.fasta.mmi" "reference.fasta"

#41 socialhang closed 11 months ago
2
why .hic file in juice box have lots of black line

#40 markme123 closed 10 months ago
4
Process 'POREC:digest_align_annotate (1)' terminated with an error exit status (1)

#39 malszycki closed 9 months ago
9
CZI EOSS6

#38 nvictus closed 11 months ago
2
POREC:merge_namesorted_bams (1) terminated with an error exit status (1) -- Execution is retried (1)

#37 Oksanak22 closed 4 months ago
23
What scaffolder to use with .hic file?

#36 SwenDiepstraten closed 9 months ago
7
How I can know how many bins were with chunk_size = 1000 in nextflow.config

#35 Oksanak22 closed 1 year ago
5