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Hi, @tangerzhang
I have finished my contig-level assembly using hifiasm with hifi reads. Because Purge-dups was contained in hifiasm, so I directly using Purge-dups contigs. Following your tutoria…
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Hi,
Thanks for sharing this amazing tool.
I am building the assemblies according to the homepage pipeline, and the bwa sampe is quite time-consuming,
so, at the same time, I tried to use t…
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Here a resume of the size of my genome after each step
| assembly | primary size (bp) | haplotig size (bp) | total (bp)
| --- | --- | -- | -- |
| falcon unzip | 879494072 | 161125037 | 104061…
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Hi, is ALLHiC compatible with Omni-C libraries? Thanks, André
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Hi,
We have one population consisted of 192 F3 lines resulting from a cross between two plants (Lab x QLD).
Additionally, we created 2 assemblies out of the above two plants and grouped them and gro…
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Dear Xingtan,
Do you have any plan to update multiple restriction enzyme functions?
I love you.
Won
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Hi, @tanghaibao and @tangerzhang ,
my scaffolds have many misjoins, i konw you have much experience in processing HiC data. is there any suggestions to perform error correct before running Allhic?…
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Hi, I have got a problem when I was running the protocol. I have finished generating the sam file from fq1 and fq2 file, The generated sam file is about 100G, but when I was running the PreprocessSAMs…
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Questions are as follows:
how to solve this problem？ thanks.
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I run this command as follow and the `partition.pl` generate empty file with just `chr01` directory.
```
draft_asm=litchi.contigs.fasta
partition.pl -g Allele.gene.table -r $draft_asm -b sample.cle…