phasegenomics FALCON-Phase issues

phasegenomics / FALCON-Phase

FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds

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issues

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How to split HiC reads into haplotypes?

#87 DayTimeMouse opened 1 month ago
0
restriction enzyme

#86 zhangjuncsu opened 1 year ago
0
A significant drop in BUSCO scores after FALCON-Phase

#85 melop opened 2 years ago
1
bam_filt.o:(.bss+0x50): multiple definition of `rp'

#84 bingochenbin opened 2 years ago
0
Workflow

#83 Yutang-ETH opened 2 years ago
0
HSTLIB or HTSLIB

#82 Yutang-ETH opened 2 years ago
0
number of contigs increased after falcon-phase

#81 olechnwin opened 3 years ago
0
Problem with phasing

#80 cgy0627 closed 3 years ago
3
Mapping multiple Hi-C data

#79 cgy0627 closed 3 years ago
1
User help updates

#78 shawnpg closed 4 years ago
0
BioPython required for preprocess script

#77 alanorth closed 3 years ago
2
Please tag a new release

#76 alanorth closed 4 years ago
2
Compatibility with IPA output

#75 Adamtaranto closed 4 years ago
1
phased with falcon-unzip and falcon-phase

#74 leeun357 closed 4 years ago
1
use of purge haplotigs with falcon-phase

#73 Juke34 closed 4 years ago
1
haplotig header suffix. Does the order matter?

#72 Juke34 closed 4 years ago
1
Segault on Ubuntu in phase_likelihood (with 7c50154)

#71 pontus opened 4 years ago
2
Real deletions or missing homozygous regions?

#70 uceleste closed 4 years ago
1
Add preprocess script

#69 maximilianpress closed 4 years ago
3
Software producing identical haplotypes

#68 bd904 closed 4 years ago
1
parental k-mer counting

#67 erikenbody closed 5 years ago
2
Error in rule nucmer

#66 bd904 closed 5 years ago
7
replicates and cocktail restriction enzyme

#65 olechnwin closed 4 years ago
5
zlib.h: no such file

#64 olechnwin closed 5 years ago
8
{sample}.phased.txt empty

#63 aboyher closed 5 years ago
6
run with nanopore data

#62 yilunhuangyue closed 4 years ago
2
Can we concat haplotypes.fasta and haplotigs.fasta sequences ?

#61 jnarayan81 closed 4 years ago
1
fixing the bam filt segfault by syncing the latest matlock filters in…

#60 zeeev opened 5 years ago
3
Compatibility with FALCON headers

#59 pb-cdunn closed 5 years ago
8
Falcon-Phase second round

#58 iggyB closed 4 years ago
11
chunk HiC mapping step

#57 iggyB closed 4 years ago
3
Fix falcon-phase printing order bug

#56 zeeev closed 4 years ago
3
falcon-phase bamfilt segmentation fault on some OSs

#55 peterdfields closed 5 years ago
6
Update readme

#54 skingan closed 5 years ago
0
prevent git from adding FP binary to repo

#53 zeeev closed 5 years ago
0
empty XX.phased.1.fasta

#52 BenjaminSchwessinger closed 5 years ago
13
Add files via upload

#51 skingan closed 5 years ago
0
Update README.md

#50 skingan closed 5 years ago
1
A and B labels fixed

#49 skingan closed 5 years ago
0
reverted emission and name_mapping correctly, updated config.json for…

#48 skingan closed 5 years ago
0
how to edit the config.sh

#47 xiaoaozqd closed 6 years ago
1
Re-write emit_haplotigs.pl in Python

#46 pb-cdunn closed 6 years ago
0
Merge Development into master

#45 zeeev closed 6 years ago
4
Trio snp validation

#44 zeeev closed 6 years ago
0
Trio snp validation

#43 zeeev closed 6 years ago
1
makefile bug -lcurl

#42 hewm2008 closed 6 years ago
1
Fix warnings

#41 pb-cdunn closed 6 years ago
2
Development

#40 pb-cdunn closed 6 years ago
0
Development

#39 pb-cdunn closed 6 years ago
0
Multiple restriction motifs?

#38 Adamtaranto closed 6 years ago
1