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**What topic do you wish to add?**
National resources page for Norway (will close #146 )
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We have noticed an issue with AMRfinder not identifying MCR 9 genes present in our isolates. For example, the isolate SRR21865985 contains MCR 9.2 - it is a full length copy of the gene and a 100% ma…
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GitHub Action Workflow fails with exit code 137, which may be an out of memory error.
Need to confirm this is the problem. If it is, we need to reduce the memory requirement. See https://github.co…
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I used the following command to check the running status of this tool.
bactopia --use_ena --accession SRX4563634 --datasets datasets/ --species "Staphylococcus aureus" --coverage 100 --outdir ena-s…
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@lwaldron, @kbeckenrode, some PATRIC_IDs belong to the same Taxon. Should the annotations of these PATRIC_ID's be merged into a single entry (row)? The PATRIC_ID field/cell could be `"1733.103, 1733.2…
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Hello,
I am attempting to use this tool and am beginning with database installation on my institutions HPC. I am accessing bakta via Conda environment.
```
(bakta) [shigdon@c1hitachi10 bakta]$ …
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### Week 1 - Get to know the community
- [X] Join the communication channels
- [X] Open a GitHub issue (this one!)
- [X] Install the Ersilia Model Hub and test the simplest model
- [x] Write a m…
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**Submitting author:** @jhayer (Juliette Hayer)
**Repository:** https://github.com/jhayer/baargin
**Branch with paper.md** (empty if default branch):
**Version:** v0.1
**Editor:** @fboehm
**Reviewers…
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**Description**
Apparently many programs are grabbing their versions with locale warnings included, making `BACTOPIA:CUSTOM_DUMPSOFTWAREVERSIONS` to fail.
**Steps to Reproduce**
Here's the error:…
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## New Term Requests: SIR & WRG
### Parent Class: antimicrobial resistance testing reference standard [ARO:3004360]
**Label:** Swedish Reference Group for Antibiotics (SIR)
**Definition:** SIR …