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Hi everyone I am new to MaSuRCA Reference guided assembly. I am using chromosome_scaffolder.sh for scaffoding. I have shared the log info, I don't know what is the error. Could you help me with this?
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Hello STAR team,
Thank you for the nice tool, i use it a lot.
Currently i am trying to run STARsolo on a SMARTseq2 dataset GSE209742.
I have downloaded all the fastq files and created a manifest…
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Dear get_phylomarkers team
Recently, I conducted an analysis using get_phylomarkers based on the core genome calculated through get_homologues, and in the final part of the analysis, it abruptly te…
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Hi Sir,I want to use T2T-genome and its transcripts.gtf to builde the Reference.It's going wrong at :
Jul 04 21:37:17 ..... started STAR run
Jul 04 21:37:17 ... starting to generate Genome files
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Thank you for the wonderful tool! When I want to make my own GRN, get error. My network can't download ref_genome so
I manual download https://hgdownload.soe.ucsc.edu/goldenPath/mm39/bigZips/mm39.fa…
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I would like to use the pipeline on a large plant genome. Would it be to run separately on chromosomes or directly on the entire genome? Are there any requirements for CPUs and RAM? Have you ever test…
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### Description of the bug
Hi, I'm trying to use Sarek from the annotation step. I'm using Linux and Conda. Each time I try, it gives me an error like this:
ERROR ~ Error executing process > 'NFCO…
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when i run bowtie2 and specify the number of threads to use(eg `-p 1`, `-p 4`), the amount of CPU usage is always 1 more core in use than is specified by the number of threads to use.
for example, if…
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### Description of the bug
I am new to nextlfow sarek pipeline, I tried to use docker as profile to test run the sarek pipeline but it had error. is this the docker issue ? how can I download back th…