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In the REST API, we have a switch to include nonspecific probes when selecting expression data or differential expression results per gene. This is necessary because we don't want to show probes that …
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Xpost: https://discourse.julialang.org/t/scimlsensitivity-jl-precompile-error-because-of-enzyme/122561/9
Trying to follow along this the SciMLSensitivity.jl tutorial:
[Parameter Estimation of O…
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Recently I have noticed that when I tried to visualize up-regulated and down-regulated signaling ligand-receptor pairs using bubble plot, sampe LR pairs appears in both the up-regulated side and down-…
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The following reproducer generates incorrect code:
```julia
using Symbolics
x = only(@variables(x))
f = mod(x, 1.0)
df = Symbolics.derivative(f, x)
dfc = Symbolics.build_function(df, x; expres…
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User driven question: if a patient name has a limit of 100 characters, is that able to be represented in a profile
I believe the answer is yes.
We should note in the documentation that Profiles …
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### Description of the bug
With test data, volcano plots in interactive reports show differential genes in orange. With my own data, the workflow completes without error, but, as shown in the followi…
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Hi there,
Thanks for your excellent work! I have three questions and hopefully you could help me out.
1.I was wondering if there is a input parameter of the function show.velocity.on.embedding.c…
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### Operating System
Ubuntu 22.04
### Other Linux
_No response_
### Workflow Version
v1.4.0
### Workflow Execution
Command line (Cluster)
### Other workflow execution
_No re…
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Hi @sqjin
Congrats on this this great library.
I am running some of the functions on my datasets and I came across an interesting observation.
After DGE analysis, I am finding the same pair of L…
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I would like visualizations to be able to specify that they receive named sets of files. The primary usecase is heatmap-scatterplot: The visualization may receive one-or-more counts files, zero-or-mor…