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Hello, I am trying to run Spitfire from Jupiter notebook. I first tried just your code for Python users with C.elegans image and unfortunately, the code breaks and an error appears that the SPSFGaussi…
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In graph construction, , how to generate a psm header file from any original .mgf file?
When I do graph construction with the supplied "A_Thaliana.csv" and "A_Thaliana.mgf" under the same folder, …
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In a series of documents, I will discuss the role of the command-neurons, different types of motor neurons and their connectivity with the body-wall muscle cells. The ultimate goal is to derive a vali…
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I use AML to automatically generate ontology mappings between HPO and MPO & HPO and ZPO. However, I find the number of mappings is quite different. For HP-MP mappings, the size is over 2,000, while fo…
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See:
https://sourceforge.net/p/geneontology/ontology-requests/11074/
is this the right one?
```
is_a WBbt:0005766 ! Anatomy
is_a WBbt:0005738 ! body region
is_a WBbt:0005741 ! tail
po…
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For kinetics estimation from structural properties for ion channels in C. elegans, we need to collect a dataset of available electrophysiology data.
For each ion channel, data should at least contain…
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Hello!
I did a synthetic genome to check the outputs and the conterminator failed to predict inserted contaminants.
**Infos:**
Version: 1.c74b5
Organisms in this synthetic genome: Saccharum hy…
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Hi there,
This is more of an inquiry than an issue.
I just cam across your paper describing TIDDIT and wanted to give your software a test. I am wondering how to deal with ploidy. Though the or…
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A satellite issue to
- https://github.com/bids-standard/bids-specification/issues/1633
and could be of interest to @bids-standard/bep032 .
ATM `age` column is assumed to be "since birth" but in s…
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Originally asked by @benjijack over [here](https://github.com/openworm/CElegansNeuroML/issues/56#issuecomment-200050852):
> As a step toward that goal, building on @theideasmith's work importing Kato…