steineggerlab conterminator issues

steineggerlab / conterminator

Detection of incorrectly labeled sequences across kingdoms

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issues

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List of accession numbers for contamination in UniProt

#25 fmaumusINRA opened 8 months ago
0
Segmentation fault (core dumped). Error: crosstaxonfilterorf step died

#24 keishaboateng97 opened 10 months ago
0
Conterminating the output of DIAMOND deepclust

#23 LotharukpongJS opened 1 year ago
0
The result of "$taxidmapping" is: BL_ORD_ID:0 0 and etc.

#22 maruiqi0710 opened 1 year ago
0
Extractframes died (segmentation fault)

#21 stas-malavin opened 1 year ago
0
Some configurations of taxons in --kingdoms don't work

#20 HeloiseMuller opened 1 year ago
0
GTDB

#19 andrewjmc opened 3 years ago
1
Error occurred when building mmseq on Mac

#18 ywe-1 opened 3 years ago
1
conterminator frozen at stage rescorediagonal

#17 tougai opened 3 years ago
8
how to reports contamination with the target sequence is longer than 20kb

#16 lindechun opened 3 years ago
1
Comparison across phylum, order, class and etc.

#15 jiapengatviome closed 3 years ago
0
Removing sequences based on conterminator output

#14 chassenr closed 3 years ago
2
corrected contig length in {RESULT_PREFIX}_conterm_prediction file

#13 casolp opened 3 years ago
0
Error: Extractframes died

#12 chassenr closed 3 years ago
6
fail to predict inserted contamination

#11 felipevzps opened 4 years ago
5
Error: kmermatcher step died

#10 gbdias opened 4 years ago
1
Error: integer expression expected

#9 felipevzps closed 4 years ago
1
Error: crosstaxonfilterorf step died

#8 vtrinca closed 4 years ago
11
Add support to provide custom NCBI taxonomy file to the protein command

#7 apcamargo closed 4 years ago
1
Invalid pointer during calculation of alignments

#6 apcamargo opened 4 years ago
1
Conterminator stopped after downloading taxdump.tar.gz

#5 martin-steinegger closed 3 years ago
10
Input format

#4 ghost closed 4 years ago
5
Use newer sse2neon?

#3 jserv closed 4 years ago
5
List of accession numbers for contamination in NR

#2 pmenzel opened 4 years ago
10
Link to poster

#1 pvanheus opened 5 years ago
0