-
Add GTEx data to HumanMine.
-
I get the following error when running an eQTL mapping using the new build.
Error explained here: http://itext-general.2136553.n4.nabble.com/com-lowagie-text-exceptions-IllegalPdfSyntaxException-Unba…
-
Dear caviar developers,
Thanks for making this tool. I've been using it to look at some colocalization signals. I see in the output that three files are generated for each trait, with suffixes "_1…
-
Need to upload the following files:
* QC Geneseek Data
* Genoype probability reconstruction using RNA-seq data
* QC RNA-seq Data
* QTL mapping
* Bayesian interval mapping
* GWAS and Candidate g…
-
SuRE-seq, the previous dataset I was working with, is fundamentally a promoter assay, and therefore it was hard to find many biologically relevant features other than GC content (which affects nucleos…
-
With @pcarbo.
## The model
We will start building a general model that uses variational inference to perform multivariate Bayesian variable selection. We want to assess both the spike-slab prior wher…
-
with @NKweiwang
# Aug 7
Discussion on multivariate, multiple regression version of ASH extension, i.e., extending the `mash` model with `mvash`. [This issue](https://github.com/gaow/mvarbvs/issues/2)…
-
Hi David,
Thanks for making leafcutter available. I am wondering what your strategy is to deal with 0/0 in sQTL mapping. I have a few thoughts but none are quite optimal. The first one is to simply t…
-
1. To get tissue names that are consistent across the gene expression file and the eqtl file so that one could be mapped to the other
kkdey updated
9 years ago
-
There are some dependency issues with the genetica libraries (colt lib can't be found)