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davidaknowles
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leafcutter
Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
http://davidaknowles.github.io/leafcutter/
Apache License 2.0
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run_leafviz.R error
#260
Yang-Yingshan
closed
3 weeks ago
3
Devtools leafcutter installation error
#259
DzvinkaYarish
opened
1 month ago
1
Differential Splicing using perind.counts.gz file
#258
zhangpicb
opened
1 month ago
0
To many clusters without any count values
#257
Sktbanerjee1
opened
2 months ago
0
leafcutter2::leafcutter-ds errors out when groups_file.txt has no cofounder columns
#256
lianos
opened
4 months ago
0
Enable leafcutter-ds to handle a group_file with no confounder columns
#255
lianos
opened
4 months ago
0
Installation problem. py2.7 r3.6.0 conda install
#254
Arnoc233
opened
5 months ago
4
leafcutter_ds.R got error
#253
q1134269149
opened
5 months ago
2
Installation probelm r/4.3.1
#252
seyoun209
opened
6 months ago
6
checkchrom issue
#251
Huxiaowei1997
opened
6 months ago
0
checkchrom doesn't seem to work for me
#250
ls233
opened
7 months ago
1
--outSAMtype BAM Unsorted ?
#249
ls233
closed
7 months ago
3
Empty cluster output
#248
Dongmeng-wang
opened
8 months ago
1
installation problem
#247
mick42-star
opened
11 months ago
3
error in prepare_phenotype_table.py
#246
anneday
opened
11 months ago
0
Error Running Differential Splicing Analysis
#245
lichtenj
opened
12 months ago
0
leafviz visualization does not show gene names
#244
XuBian
closed
10 months ago
1
Delta psi is inconsistent in Leafviz
#243
hanyizhou123
closed
1 year ago
1
Update prepare_results.R
#242
abhilashdasari
closed
1 year ago
1
Devtools installing LeafCutter Error
#241
yr542
opened
1 year ago
5
ENSG id and gene name not matching
#240
seyoun209
opened
1 year ago
3
Unable to install leafcutter R 4.2.1
#239
chesi
opened
1 year ago
10
question regarding p-value for each intron usage
#238
seyoun209
opened
1 year ago
0
an error about leafcutter_cluster.py
#237
Fight-a-tiger-in-the-mountain
closed
10 months ago
4
Error report for $bam2junc.sh
#236
Fight-a-tiger-in-the-mountain
closed
1 year ago
0
question regarding the AS types (paper supplementary figure1)
#235
seyoun209
opened
1 year ago
0
Junc files include one strand
#234
NufarGrinshpan
opened
1 year ago
2
Intron Clustering
#233
JaydenBeckwith
closed
1 year ago
5
leafviz error
#232
seyoun209
closed
1 year ago
9
more than one genes in one cluster
#231
XMTian
opened
1 year ago
0
Start and end sites of junctions
#230
Dongmeng-wang
closed
8 months ago
0
Add shebang line to leafcutter_cluster_regtools.py
#229
tfenne
closed
1 year ago
1
Positive splicing events are not be detected
#228
ym-chen
opened
1 year ago
2
differential splicing with continuous independent variable
#227
Dongmeng-wang
opened
1 year ago
0
this is broken
#226
kennyworkman
opened
1 year ago
0
Creating co-splicing networks with leafcutter output?
#225
JeGrundman
opened
1 year ago
0
Alternative splicing signal on tandem duplicated genes
#224
XMTian
opened
1 year ago
1
confusion of normalization method for sQTL input date prepare
#223
tianwen0003
opened
1 year ago
1
Potentially incorrect use of minclureads and minreads
#222
anikethjr
opened
1 year ago
4
Behavior of -p --mincluratio: unexpectedly removing intron clusters
#221
VitorAguiar
opened
1 year ago
1
enhancement
#220
herber4
opened
1 year ago
2
shinyapp leafcutter
#219
seyoun209
closed
1 year ago
1
how to identify the alternative splicing events for differential cluster, such as ES/MXE/IR/Alt5’/Alt3’
#218
lironghu
opened
2 years ago
0
Bug found in hg38 annotation codes file for LeafViz
#217
raungar
opened
2 years ago
1
example_data missing
#216
aojielian
opened
2 years ago
0
Question about applying PCA on intron usage ratios
#215
Rhopala
opened
2 years ago
0
Add shebang line for leafcutter_cluster_regtools.py to fix an error.
#214
hsun3163
closed
1 year ago
0
Confusion about Proper Input File Extension and Content
#213
Rhopala
opened
2 years ago
0
Redundant Splice Event Clustering
#212
kfdowling
closed
2 years ago
1
Not reproducible results
#211
serpei
opened
2 years ago
0
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