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Thank you very much for making this software. I have a question: When I assembled the plant mitochondrial genome, I got a file named embplant_mt.K105.scaffolds.graph1.1.path_sequence.fasta. Can I use …
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Issue destinado a recopilar aquellas fuentes bibliográficas, así como datos de secuenciación y herramientas de tratamiento y análisis de los mismos, que podrían resultar útiles e interesantes a la hor…
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### Ask away!
Dear community,
I am quite new to this, I have performed a transcriptome analysis using epi2me labs app,
My question is, what should i do after ? I have several files and I don't k…
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Dear Sir,
I saw kmc_genome_counts is used in https://github.com/msauria/T2T_Kmer_Analysis for the analysis of the T2T genome. But I cannot find it in the current KMC. I wonder how I would be able t…
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Hello,
is this repo still active?
I found some problems building the docker:
## Problem1 (probably solved) : Package python-software-properties not available
```
$ git clone https://github…
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MVP data:
[MVP](https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs002453.v1.p1) is an ongoing prospective cohort study and mega‐biobank in the Department of Veterans Affairs Heal…
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![upsetr](https://github.com/user-attachments/assets/d279210e-4f0d-47ed-9be5-56a190de255d)
Sorry for this question, but could someone help me understand this graph?
P.S.: IDs with "_REF" are ref…
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Hi, thank you for developing Control-freec.
When I was running the gccount program, I encountered the following error message:
> Unable to open fasta file for chr 248956422 in folder /home/user/re…
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-searching for indexed reference genome to decrease computational resources needed for indexing
- links :
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/405/GCA_000001405.15_GRCh38/seqs_for_a…
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Hello Nicholas
Firstly thanks for developing this tool, it's really helpful!
Now I have Hi-C data from one individual, and I want to compare the contacts between two alleles (to see if allelic heter…