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KMC
Fast and frugal disk based k-mer counter
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KMC froze at Stage 1: 2%
#242
zhangrengang
opened
1 month ago
0
incompatibility with tab character in line1 of FASTQ
#241
iorga
opened
2 months ago
0
smudge_pairs: command not found Error
#240
setshabaTaukobong
opened
3 months ago
2
Seems that only one-line FASTA files are supported
#239
shenwei356
closed
3 months ago
2
v3.2.4 stalls on very large dataset but v3.2.1 does not
#238
peter-kanvas
opened
4 months ago
2
How to merge k-mer frequencies
#237
GLking123
closed
4 months ago
9
Storing k-mers without counters
#236
peter-kanvas
opened
5 months ago
2
Not processing all reads when limiting number of threads
#235
nikostr
closed
5 months ago
3
Dump with empty output
#234
MagpiePKU
opened
6 months ago
2
T2T genome kmer count problem
#233
liujilei156231
closed
7 months ago
2
qol revisions: SIMD detection, external zlib, Makefile CXXFLAGS/LDFLAGS
#232
ggraham
opened
7 months ago
0
when trying use kmc analyze .fasta file
#231
speed090
closed
8 months ago
2
munmap_chunk(): invalid pointer on ubam file - KMC crashes on BAM with long reads
#230
tbenavi1
opened
8 months ago
4
Compilation and code reuse improvements.
#229
maciejdlugosz
closed
8 months ago
0
kff to jf (or vice versa)
#228
JosephLalli
closed
10 months ago
2
kmc_tools simple intersect & union, not considering reverse complement?
#227
zhaotao1987
opened
10 months ago
3
Fix header dependency issues when building with GCC 13
#226
tmaklin
closed
11 months ago
1
Add cmake-based build system
#225
asl
opened
1 year ago
1
smudge pairs install
#224
zhangyuxin1012
opened
1 year ago
1
Empty output
#223
mesti90
opened
1 year ago
2
KMC abrubtly not working
#222
jrostudent
opened
1 year ago
13
kmc_tools filter does not accept large FASTA input
#221
mscharmann
opened
1 year ago
1
how to create multiple kmc db output as per @input_file_list.
#220
bio-developer
opened
1 year ago
1
kmc_tools dump not creating file
#219
kzuckerman
closed
1 year ago
3
Run stages separately
#218
tbenavi1
opened
1 year ago
3
Small suggestion
#217
KBT59
opened
1 year ago
3
Python 3.11 support
#216
tbenavi1
opened
1 year ago
0
Fix missing includes
#215
marcom
closed
1 year ago
0
KMC yields an error on fixed width fasta files
#214
mesti90
opened
1 year ago
4
Error: some error while reading fasta file, please contact authors (kmc_core/fastq_reader.cpp: 704)
#213
durrantmm
closed
1 year ago
1
When compiling make on the arm platform, the following error occurs, using the clang and clang++ compilers
#212
123xyl
closed
1 year ago
21
Space shortage for output not reported
#211
jamshed
opened
1 year ago
0
how to install kmc
#210
123xyl
closed
1 year ago
3
how to install kmc on arm platform ，the compiled KMC binary will not be used on ARM
#209
123xyl
closed
1 year ago
2
request: specify several input files (paired-end reads)
#208
rderelle
closed
1 year ago
3
kmc stuck at Stage 1: XX%(less than 100%)
#207
fanmiaowang
opened
1 year ago
1
KMC hangs
#206
jodyphelan
opened
1 year ago
1
trying to increase maximal value of a counter (using -cs)
#205
benliu5085
closed
1 year ago
3
Bug with extra large `k`-mers
#204
jamshed
closed
2 years ago
6
Error: unknown exception
#203
jiyoungAn
closed
2 years ago
1
have no peak
#202
JXAUDZF
opened
2 years ago
11
Apple Silicon Build Issue
#201
jeremiahpslewis
opened
2 years ago
6
How to get kmer count of kmc output database
#200
jessicabonnie
closed
1 year ago
8
KMC reads the sequences from standard input
#199
shokrof
closed
2 years ago
2
the use of the -ci parameter
#198
SUPERI-SAI
opened
2 years ago
3
Error: cannot open file: /path/xx.fq.gz
#197
xibeixingchen
opened
2 years ago
3
std::thread::hardware_concurrency() should not be used
#196
jbd
opened
2 years ago
0
Windows release file appears broken
#195
rcedgar
closed
2 years ago
1
kmc_tools always in in1: 0%
#194
zhangrengang
opened
2 years ago
9
How to hack KMC source to implement variant of k-mer counting
#193
rcedgar
opened
2 years ago
4
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