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KMC
Fast and frugal disk based k-mer counter
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Dumping minimizers/superKmers/signatures
#188
mr-eyes
opened
2 years ago
3
Couldn't run KMC after troubleshooting with issue #176
#187
naahraissa
closed
2 years ago
14
question about kmc_genome_counts
#186
weiwsmiling
opened
2 years ago
3
How to generate multi-samples kmer count table?
#185
zhangrengang
opened
2 years ago
10
kmer presence issue
#184
chklopp
closed
2 years ago
4
consistency check of the input format
#183
tlemane
opened
2 years ago
3
Creating histogram of kmer presence in genomes
#182
lucaparmigiani
opened
2 years ago
2
KMC installation problem
#181
wjj666
closed
2 years ago
4
Missing k-mer bug
#180
jamshed
closed
2 years ago
1
Allow to count k-mers form KMC database in KMC1 format for small k values
#179
marekkokot
closed
2 years ago
1
Skipping counters for very small `k`
#178
jamshed
closed
2 years ago
1
confusion with results interpretation
#177
Aannaw
opened
2 years ago
7
how to run KMC with assembly genome (fasta）
#176
Aannaw
opened
2 years ago
21
confusion with
#175
Aannaw
closed
2 years ago
0
Segmentation fault with kmc
#174
AFrolicOfFerns
closed
2 years ago
2
command line syntax issue
#173
dcopetti
closed
2 years ago
2
Make `const` values usable in `constexpr`
#172
jamshed
closed
2 years ago
0
cannot open file: 30(base)
#171
dcopetti
closed
2 years ago
1
Missing 4mers from metagenomes
#170
mkellom
closed
2 years ago
11
Gather multiple genomes output into one table
#169
uguyet
closed
2 years ago
1
new kmers that not exist in the sequnce
#168
gorliver
closed
3 years ago
3
How to quickly find the position of k-mer on the genome
#167
slbai01
opened
3 years ago
1
make error
#166
yuanw-18
closed
3 years ago
10
Producing smaller k-mers from databases with larger k-values
#165
jamshed
closed
2 years ago
2
Develop2
#164
danflomin
opened
3 years ago
0
canonical k mers
#163
augustkx
opened
3 years ago
3
.bin files missing in tmp dir
#162
RNieuwenhuis
closed
3 years ago
2
Update `const` qualifications in `kmc_api`
#161
EQt
opened
3 years ago
0
kmc does not write to working_directory
#160
eaton-lab
closed
3 years ago
2
GetCountersForRead requires random access mode
#159
tbenavi1
opened
3 years ago
5
[ISSUE] KMC stopped at stage1
#158
Sherry520
opened
3 years ago
10
std::bad_function_call
#157
fls-333
opened
3 years ago
1
Extending `MAX_K`
#156
jamshed
closed
2 years ago
1
In Kmer_counter in see s_mapper.h and params.h are cross-inclusions, so is there a problem?
#155
TyrionBian
opened
3 years ago
0
can't install on aarch64 platform
#154
zk469334537
opened
3 years ago
0
Error: some error while reading fastq file, please contact authors
#153
vjanousk
opened
3 years ago
0
is_allowed question and possible bug
#152
jhh67
opened
3 years ago
3
Possible bugs in multiline FASTA parsing
#151
jamshed
closed
3 years ago
5
CheckKmer incorrectly returns false if query is noncanonical.
#150
tbenavi1
closed
4 years ago
2
conda installation segmentation fault
#149
danessel
opened
4 years ago
1
How many kmers in an existing kmc file?
#148
cmfield
closed
4 years ago
2
Question on CKMCFiles
#147
GaryGohYP
opened
4 years ago
6
Normalize counts to sequencing depth
#145
kcygan
opened
4 years ago
4
Enable Kmer counting at peptide level
#144
ritah-nabunje
opened
4 years ago
1
support extracting skip-mers rather than kmers from reads
#143
notestaff
opened
4 years ago
0
enable amino acid kmer matching through translation to canonicalized codons
#142
notestaff
opened
4 years ago
3
Cram support
#141
jjfarrell
opened
4 years ago
2
Odd error writing temporary file bins - Error: Cannot open temporary file bins/kmc_00253.bin
#140
jandreslopez
closed
4 years ago
3
CKMCFile::GetBothStrands -- discrepancy in documentation
#139
karasikov
closed
4 years ago
1
Error: Wrong input file!
#138
amitj-i
closed
2 years ago
6
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