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KMC
Fast and frugal disk based k-mer counter
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Can't count kmer on fastq file
#137
chequochuu
opened
4 years ago
10
CS option
#136
Malabady
closed
4 years ago
2
Using BAMs with KMC
#135
harish0201
opened
4 years ago
2
Counting kmers of different reads separately.
#134
TahaAslani
opened
4 years ago
0
paired-end sequencing fastq file
#133
xuyiran0609
closed
2 years ago
4
Protein sequence
#132
TahaAslani
opened
4 years ago
2
Option for kmc_dump to be sorted by kmer?
#131
tseemann
closed
4 years ago
3
Garbage kmer results for short sequences
#130
tseemann
closed
4 years ago
6
OpenForRA method with optional minimum and maximum parameters
#129
tbenavi1
closed
4 years ago
2
Converting database formats from KMC1.x to KMC2.x
#128
cpockrandt
opened
4 years ago
2
KMC union malfunction
#127
TahaAslani
opened
4 years ago
1
Complex core dump error
#126
TahaAslani
closed
4 years ago
4
Is it possible to replace kmer counts with another value?
#125
mladen5000
closed
2 years ago
2
feature request: unbounded calculation of coverage histogram & reporting non-empty coverages
#124
KamilSJaron
opened
5 years ago
3
Resource specifications for stage 2
#123
KamilSJaron
closed
5 years ago
10
Issue114 and some cleaning
#122
marekkokot
closed
5 years ago
0
read from sra file
#121
gorliver
opened
5 years ago
1
tag a release?
#120
notestaff
closed
5 years ago
3
Warning in compilation of kmc_api/kmc_file.cpp
#119
voichek
closed
5 years ago
4
How to get the bit representation from KMC-API
#118
voichek
closed
5 years ago
2
Using namespace std in an header file
#117
voichek
closed
5 years ago
2
A needle in haystack
#116
Sheikhizadeh
closed
5 years ago
6
kmc_tools transform histogram cs maximum 10000
#115
tbenavi1
closed
5 years ago
2
kmc_tools filter shows incorrect warnings
#114
marekkokot
closed
5 years ago
0
Computing jacquard distances
#113
TransGirlCodes
opened
5 years ago
1
easy way to dump kmers with certain prefixes?
#112
chunlinxiao
opened
5 years ago
6
avoid redefinition
#111
karasikov
closed
5 years ago
0
Can not read data downloaded from NCBI
#110
JasonKwuo
closed
5 years ago
1
Error: Cannot create file: out_kmers.kmc_pre
#109
microDM
closed
5 years ago
0
hard masking -- softer criterion
#108
notestaff
opened
5 years ago
0
document that hard masking ignores -cx
#107
notestaff
opened
5 years ago
0
bug? hard masking
#106
notestaff
closed
5 years ago
2
bug: hard masking off when filtering reads with -ci0
#105
notestaff
opened
5 years ago
1
feature request: limit kmer db construction to kmers in another db
#104
notestaff
opened
5 years ago
0
Wrong kmers appearing, existing kmers are missing...
#103
denesbartha
opened
5 years ago
4
wrong default cutoff_max for union operation
#102
notestaff
opened
5 years ago
0
abi version?
#101
notestaff
closed
5 years ago
1
fix release name; merge more fixes?
#100
notestaff
closed
5 years ago
4
added some gitignore entries
#99
notestaff
closed
5 years ago
0
fixed memory leak in kb_storer where CMemDiskFile objects were not being freed
#98
notestaff
closed
5 years ago
1
fix uninitialized memory error caused by reading a uint32 into a uint64 max_count
#97
notestaff
closed
5 years ago
0
memory errors: Conditional jump or move depends on uninitialised value(s)
#96
notestaff
closed
5 years ago
3
building kmer database from empty fasta file with -fa gives "wrong input file"
#95
notestaff
closed
5 years ago
0
memory leak?
#94
notestaff
closed
5 years ago
5
Make sure that KMC database is portable (platform independent).
#93
marekkokot
opened
5 years ago
1
serious bug: results depend on memory and thread parameters
#92
notestaff
closed
5 years ago
2
fix handling of empty kmer databases
#91
notestaff
closed
5 years ago
1
check with valgrind
#90
notestaff
closed
5 years ago
7
non-canonical forward kmer count is different than kmer count of forward+reverse
#89
tolot27
closed
5 years ago
7
wrong kmer counts on fastq file with empty reads
#88
nwespe
closed
5 years ago
2
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