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KMC
Fast and frugal disk based k-mer counter
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fix handling of empty kmer databases
#91
notestaff
closed
6 years ago
1
check with valgrind
#90
notestaff
closed
5 years ago
7
non-canonical forward kmer count is different than kmer count of forward+reverse
#89
tolot27
closed
5 years ago
7
wrong kmer counts on fastq file with empty reads
#88
nwespe
closed
5 years ago
2
Print statistics after k-mer intersection
#87
fbreitwieser
closed
5 years ago
1
bug report - filtering empty database
#86
notestaff
closed
6 years ago
2
bug report -- segfault
#85
notestaff
closed
5 years ago
1
option to store min or max position of kmer in input sequences, instead of the kmer count
#84
notestaff
opened
6 years ago
0
command to print info about a kmer database
#83
notestaff
opened
6 years ago
2
BUG: kmc_tools cannot analyze pre+suf files, but kmc_dump could
#82
gyslovecj
opened
6 years ago
17
filter reads by kmers clustered together
#81
notestaff
opened
6 years ago
0
document the hard mask option
#80
notestaff
opened
6 years ago
0
cannot find -lpthread
#79
tiramisutes
closed
6 years ago
2
drop kmers that only appear at one position in reads
#78
notestaff
opened
6 years ago
0
API for KMC database construction
#77
karasikov
opened
6 years ago
2
minor clean up, some warnings fixed
#76
karasikov
closed
6 years ago
4
python API
#75
notestaff
closed
5 years ago
2
add option to count each kmer at most once per read
#74
notestaff
opened
6 years ago
1
add flat list of kmers as input format
#73
notestaff
opened
6 years ago
0
for read filtering, must read names be unique?
#72
notestaff
closed
6 years ago
1
support gapped kmers
#71
notestaff
opened
6 years ago
0
Extend max supported counter vaule
#70
marekkokot
opened
6 years ago
0
output just read names
#69
notestaff
opened
6 years ago
0
filtering paired reads
#68
notestaff
opened
6 years ago
3
compressed output file support for filtering reads
#67
notestaff
opened
6 years ago
1
support bam file for filtering reads
#66
notestaff
opened
6 years ago
3
fix command-line help
#65
notestaff
closed
6 years ago
1
kmc_dump --version returning failed exit code
#64
tseemann
closed
6 years ago
0
kmc_tools --version => segfault
#63
tseemann
closed
6 years ago
1
Some error while reading gzip file
#62
irenatfh
opened
6 years ago
11
return non-zero error code on failure
#61
notestaff
opened
6 years ago
0
makefile targets don't depend on header files
#60
notestaff
opened
6 years ago
0
small bug
#59
notestaff
closed
6 years ago
1
set all counts to a specified value
#58
notestaff
closed
6 years ago
14
filter command doesn't support multi-line fastas
#57
notestaff
opened
6 years ago
4
Union resulting in smaller database than the individual file
#56
Ritu-Kundu
closed
6 years ago
5
test suite?
#55
notestaff
opened
6 years ago
2
the 'complex' operation of kmc_tools does not seem to work
#54
notestaff
closed
6 years ago
4
Option to limit number of reads/kmers processed?
#53
tseemann
opened
6 years ago
0
v3.0.1 is still printing "v3.0.0" in the help?
#52
tseemann
closed
6 years ago
1
Error message: Error: Cannot open temporary file tmp/kmc_00000.bin
#51
niuyushuo
closed
6 years ago
5
g++ (c++14) error: 'modf' is not a member of 'std'
#50
tseemann
closed
6 years ago
3
compile issue
#49
conchoecia
closed
6 years ago
3
python binding
#48
gorliver
opened
6 years ago
2
Help: KMC configuration
#47
taranglute
closed
6 years ago
1
kmer counts incorrect?
#46
hmusta
closed
6 years ago
2
Makefiles: honor user-supplied flags
#45
mbargull
opened
6 years ago
0
asmlib/vectorclass: Licensing issues and clarification
#44
mbargull
closed
5 years ago
3
how to get counts of selected kmers
#43
DaveRoe
closed
6 years ago
16
KMC 3 stops during stage 2 when using BFC-corrected reads
#42
flopezo
closed
6 years ago
6
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