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Hi!
We are using IGV.js to plot CNV estimates genome-wide - we are plotting WIGs for this purpose. We noticed, however, that (unlike the Desktop version) IGV.js does some form of aggregation of the W…
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Some inspiration from Genome Browser:
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We are using Biodalliance genome browser with high-coverage bam-files (up to 10,000 reads per base pair).
By default, the limit of reads to be displayed is set to 100. (And there has to be a limit, b…
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Under the "Help" drop-down menu, there is a link to our slack page. The link currently redirects users to our WashU Epigenome Browser slack page. Can we create a WashU Virus Genome Browser slack page …
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When I'm using `krakenuniq-download` to download refseq genomes, every so often it will raise an error "Error fetching [ftp link]. Is curl installed?"
curl is definitely installed. That can't be th…
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https://www.patricbrc.org/view/Genome/272563.8#view_tab=browser&loc=NC_009089%3A2167251..2177830&highlight=NC_009089%3A2172531..2172545&tracks=refseqs%2CPATRICGenes%2CRefSeqGenes
This compare regio…
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Home > View genome > Add channel
1. Notice that "South America" has a different data-type icon to the others, i.e. a bar-chart rather than a line-graph
Add the channels "South America" and "West Afr…
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HOME [tab] > Explore genomic data through the Viewer [heading] > View genome [button] > ADD CHANNELS [button] > [add channel] > channel config
1. Select "Colour By: Position", and expand/reveal the…
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Would be great to access all genome-wide [ENFORMER](https://www.nature.com/articles/s41592-021-01252-x) predictions via API. This should be possible since the predictions are shared as [h5 files here…
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I found that the repeat regions were not well aligned using the default parameters when I aligned the WGBS data to the hg38 genome. I am wondering if there are any recommended parameter settings for a…