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I tried to download all of the genomes using the "Contig accession" column in the supplementary table and these are the ones that were not recognized:
411479.31.con.0020
1351.557.con.0001
1280.10…
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The zoom in and out buttons in the control panel primarily work on the left subpanel. To recreate:
1. Go to https://proteinpaint.stjude.org/?appcard=hic and click on the 2 chr example.
2. Click on…
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Hi,
Thanks for this nice genome browser!
I was wondering if it is possible to export the screen as a publication-quality SVG?
Aziz
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Hi,
Would it be possible to add directional arrowheads (5' to 3' direction) to introns in the genes BED track? This would be similar to UCSC Genome Browser GENCODE track in the attached image. Also…
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Currently, our genomic_pos and genomic_pos_hg19 fields are coming from Ensembl, therefore, only available for those species included in Ensembl release.
We should find out a good data source from …
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HOME [tab] > Explore genomic data through the Viewer [heading] > View genome [button] > Variants [channel] > [cog button] > [channel configuration] > ADD FILTER [button] > [dialog]
(Maybe only allow …
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Hi Jayson,
In the expression table panel, it would be useful if the _feature_ field could be rendered as a URL, where feature name (often a gene symbol or a genome coordinate) would be pasted to a ba…
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Hi,
Thanks for your wonderful tools. In practice, I can successfully plot the tracks in Notebook, and I am wondering whether there is a way to save the current plot in PDF format.
Thanks so much…
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```
> ucscGenomes()
Error in UseMethod("xmlNamespaceDefinitions") :
no applicable method for 'xmlNamespaceDefinitions' applied to an object of class "NULL"
```
According to the function descri…
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Any plans on adding CIGAR strings to SAM output so I can load the alignments in a genome browser?
_Originally posted by @yhoogstrate in https://github.com/vpc-ccg/circminer/issues/4#issuecomment-64…
fhach updated
4 years ago