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fbreitwieser
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krakenuniq
🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
GNU General Public License v3.0
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Selective k-mer generation?
#186
apredeus
opened
6 days ago
1
classify: unable to mmap
#185
Krupa-17
closed
6 days ago
1
About reference DB
#184
km-2021
opened
2 weeks ago
1
build_db.sh aborted
#183
henr2934
opened
2 weeks ago
0
Consistent False Positives in Respiratory Metagenome Analysis Using KrakenUniq with the MicrobialDB Database
#182
TLH297
opened
3 weeks ago
1
Inquiry Regarding KrakenUniq Database Construction Error（about step 4&6）
#181
tinicc77
opened
1 month ago
0
krakenuniq-translate results variable for taxonomy code 1 ("root")
#180
jamieOverbeek
opened
1 month ago
0
krakenuniq build (with eukaryotes) errors
#179
mariafpv
opened
1 month ago
0
Support for interleaved paired-end FASTQs
#178
hermidalc
opened
2 months ago
0
keep database in RAM and debug
#177
DocAndymomo
opened
3 months ago
0
Number of unique k-mers
#176
BrinthaVP
opened
3 months ago
0
Which files could be deleted after building database?
#175
BhawnaY16
opened
3 months ago
0
`krakenuniq-download` is stochastic
#174
xapple
opened
3 months ago
0
4608 at ./tools/krakenuniq-download line 775.
#173
nicolo-tellini
closed
4 months ago
4
krakenuniq build error
#172
BhawnaY16
closed
4 months ago
0
out of memory with --preload-size 80GB at 128GB
#171
JochenSchaefergmxde
opened
4 months ago
5
./gzstream/version:1:1: fatal error: expected unqualified-id
#170
pinheirofabiano
closed
4 months ago
2
Kraken2Uniq
#169
annabel-dekker
closed
5 months ago
2
krakenuniq-extract-reads error
#168
km-2021
opened
6 months ago
3
Viral neighbors download (Died)
#167
jalalsiddiqui
opened
6 months ago
2
Mapping errors when downloading files
#166
jalalsiddiqui
opened
6 months ago
0
Trouble downloading viral neighbors database
#165
jalalsiddiqui
opened
6 months ago
2
krakenuniq-build error and krakenuniq results are unclassified
#164
QuietgraceH
opened
7 months ago
0
Update README.md
#163
Ethan-Hetrick
closed
4 months ago
0
build database error
#162
wz115
closed
8 months ago
2
Clarification on hierarchical read classification with multiple databases
#161
gtonkinhill
opened
8 months ago
2
Can't use k of 39 (must be <= 31)
#160
ailtonpcf
opened
8 months ago
1
Metagenomic software solving similar problems as krakenUniq
#159
pfeiferd
opened
9 months ago
0
A very long runnig time for krakenuniq
#158
Sheerlik
opened
9 months ago
4
`--preload-size` not playing well with multiple databases
#157
jvolkening
closed
10 months ago
2
preload-size error exits with code 0
#156
jvolkening
opened
10 months ago
0
krakenuniq-build error
#155
Sheerlik
opened
10 months ago
6
Non-NCBI TaxIDs -- Mapping to NCBI?
#154
valiantseal
opened
10 months ago
0
running time too long
#153
nsuarezg
opened
10 months ago
4
Timing out with pre-loading of chunked database
#152
apredeus
opened
11 months ago
3
How do I download species-specific sequences from nt Database ？
#151
wa123219
opened
1 year ago
0
Error! Didn't find taxonomy ID mapping for sequence
#150
gibberwocky
opened
1 year ago
1
Parameters for building the available databases in https://benlangmead.github.io/aws-indexes/k2
#149
yanchunzhang
opened
1 year ago
0
Indexes with GTDB [enhancement]
#148
gazollavolpiano
opened
1 year ago
0
Why use adapters when building the database?
#147
apredeus
closed
1 year ago
2
Does krakenuniq ever suppress (countable) kmers from reads?
#146
pfeiferd
opened
1 year ago
5
Blatant miscount of kmers in krakenuniq report file
#145
pfeiferd
opened
1 year ago
3
Update krakenuniq-download
#144
njohnso6
opened
1 year ago
0
empty Reportfile
#143
JochenSchaefergmxde
opened
1 year ago
6
krakenuniq-download error
#142
sekhwal
opened
1 year ago
1
.sh: 1: dustmasker: not found
#141
BhawnaY16
opened
1 year ago
1
KrakenUniq (read_merger.pl) fails when using symlinks as input
#140
boulund
opened
1 year ago
0
Fix: Add "file" to Dockerfile
#139
boulund
closed
1 year ago
0
Possible problem in krakenuniq-extract-reads
#138
Pablo-Aja-Macaya
opened
1 year ago
1
Difference in execution times
#137
emrahkirdok
opened
1 year ago
1
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