-
Dear all,
I wanted to use BGLR to estimate the genome-wide variance explained of a trait by SNPs and DNA methylation . A colleague and I noticed that BGLR estimates substantial SNP heritability or …
-
Hi FelixKrueger,
I am little confused about the number of detected Cytosine in `CX_report.txt` and `bismark.cov.gz.`
With the option `--CX`, the coverage file (`bismark.cov.gz.`) is extended t…
-
Exon annotations cause conflict in velocyto, presumably related to issue #73 there: https://github.com/velocyto-team/velocyto.py/issues/73
```
% velocyto run10x sample1 human_GRCh38_optimized_v1…
-
#55
-
Hi!
I aligned HG00096 from 1000GP with STAR and Tophat separately. And then I ran phASER using the same parameter you gave in the tutorial.
The error message for running phASER with the BAM align…
-
I really like NOJAH as a tool for GW cluster analysis, but a lot of its elements are broken. Just enough about it works such that it can get through the genome-wide cluster analysis tab. The combined …
-
Dear author, how can you assemble X and Y chromosomes? What parameters and data need to be added
-
Hi plotgardener team! :)
I was recently interested in surveying Hi-C regions with intrachromosomal translocations. I have often seen these represented in triangle plot form, as below ([Wang et al 2…
-
I am building a processing and visualization python package for dimelo-seq and other directed methylation or endogenous methylation long read sequencing genome-wide analysis. I've got a working protot…
-
Hi szpiech，
Thank you for your tool. I have a question about it.
The map file is needed in the calculation of iHS. The genetic position of the rsID is required in the map file, but the SHA…