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name: initial step size
definition: initial time step size
subClassOf: KISAO_0000242
algorithm: KISAO_0000019, KISAO_0000087, KISAO_0000088, KISAO_0000089, KISAO_0000436, VODE, ZVODE
isImp…
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- Remove because this isn't strictly valid as a discrete model; VCell picks up on this.
- Check that COPASI, GillesPy2, tellurium still pass the test suite
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---
id: gillespy2
version: 1.5.7
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_GillesPy2/87faa21d31ccc09834acb661501002d8502ca489/biosimulators.json
specificationsPa…
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In the [3] cell:
```
http://localhost:1234/api/v1/gillespy2/model/run
http://localhost:1234/api/v1/job/bfb440ab3ba796a0f324193fc6f69194-run_1/status
The job is complete.
4
http://localhost:1234/…
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name: Complex-valued Variable-coefficient Ordinary Differential Equation solver, with fixed-leading-coefficient implementation
altLabel: ZVODE
definition: ZVODE provides implicit Adams method (f…
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name: Real-valued Variable-coefficient Ordinary Differential Equation solver, with fixed-leading-coefficient implementation
altLabel: VODE
altLabel: DVODE
definition: VODE provides implicit A…
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---
id: gillespy2
version: 1.5.7
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_GillesPy2/15487f9db27df5a4a95a95dd3f4ccaa2040c0e07/biosimulators.json
specificationsPa…
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name: Explicit Runge-Kutta method of order 3(2)
altLabel: RK23
definition: RK23 uses the Bogacki-Shampine pair of formulas [1]. The error is controlled assuming accuracy of the second-order meth…
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## Issue
We need to make it possible to exchange SED-ML files between simulation tools while allowing modelers to specify particular algorithms (e.g., that they actually used) and their parameters th…
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All current Windows builds on TravisCI fail to pass the test_pause_resume test. Here is a link to a build exhibiting this. https://travis-ci.org/github/stochss/GillesPy2/jobs/716664486#L211
makdl updated
3 years ago