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Error compiling Cython file:
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...
import numpy as np
^
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I installed all the required packages properly but can't get to open any ndpi file:
```>>> ts = large_image.getTileSource('Li63T_CD3.ndpi')
Traceback (most recent call last):
File "", line 1, i…
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I was trying to reproduce the color normalization and tissue detection tutorials but the image retrieval via the girder client isn't working.
In the [former](https://digitalslidearchive.github.io/H…
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This issue is about adding a menu to the HistomicsTK front-end to create, load, and save annotations on whole-slide images.
All annotations in the [annotation schema](https://github.com/girder/larg…
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Hi, I'm trying to attach histomicstk to a remote mongodb server (on mongodb atlas), but I'm having trouble figuring out if histomics allows it.
In the `deploy_docker.py ` script there is a `--mong…
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Supports abcsFrederick/large_image#1, abcsFrederick/HistomicsTK#1
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Supports abcsFrederick/geojs#1, abcsFrederick/HistomicsTK#1
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Hi. I have been trying to host slides on S3 (through Girder's S3 assetstore) and it appears that HistomicsTK can load WSIs from S3. However, the speed is very low and loading tiles sometimes takes mor…
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This is a minor issue, but I thought I'd bring it up anyways. It seems that when I browse histomicsTK that my history becomes completely engulfed by the server requests to get tiles and pan slides. Th…
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@Peter554 Thank you so much for open-sourcing your code. The implementations are really nice to follow and are clear. This is immensely helpful to the computational pathology community, myself include…