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Peter554
/
StainTools
Tools for tissue image stain normalisation and augmentation in Python 3
MIT License
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106
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Problem of using StainTools for a tensor input
#47
RaminNateghi
opened
3 years ago
0
Question about Normalization for Immunohistochemical Stainings
#46
LindaSt
opened
3 years ago
0
GPU accelerate？
#45
ChenYuhang243
opened
3 years ago
0
omp_set_nested routine deprecated, please use omp_set_max_active_levels instead.
#44
Acmenwangtuo
opened
4 years ago
0
MultiProcessing
#43
itzAmirali
opened
4 years ago
3
Update setup.py for cudy
#42
massimilianoporzio
opened
4 years ago
0
bad_array_new_length via vahadane/macenko on very large image
#41
dchen71
opened
4 years ago
0
numpy.linalg.LinAlgError when calling transform
#40
sizhe-li
opened
4 years ago
2
Failed building wheel for spams
#39
felipezeiser
opened
4 years ago
1
ModuleNotFoundError after installation
#38
mgibbs1259
closed
4 years ago
1
Copyright and usage question
#37
kheffah
closed
4 years ago
2
Basic tidying
#36
Peter554
closed
5 years ago
0
AttributeError: module 'staintools' has no attribute 'BrightnessStandardizer'
#35
MinuteswithMetrics
closed
5 years ago
2
The software stops when have a empty tissue image when I tried to process hundreds of images
#34
3dimaging
closed
5 years ago
3
AssertionError: Negative optical density.
#33
hasibzunair
closed
5 years ago
10
Pip install broken
#32
msschwartz21
closed
5 years ago
7
Principal Eigen vectors inversion, based on the principal eigen vector
#31
dimimal
closed
5 years ago
5
Fit and transform method for a stain normalizer
#30
take5v
closed
5 years ago
4
About stain normalization speed.....
#29
YiyuHong
closed
5 years ago
1
Negative optical density issue
#28
ghost
closed
5 years ago
1
Add OD mask check
#27
EKami
closed
5 years ago
0
Floating point exception (core dumped)
#26
EKami
closed
5 years ago
13
Make `pip install` great again (2) pip install documentation?
#25
ghost
closed
5 years ago
1
Make `pip install` great again (+fix, -bloat)
#24
ghost
closed
5 years ago
2
ModuleNotFoundError after installation
#23
ntomita
closed
5 years ago
3
stain augmentation seems to modify contrast/intensity but not hue
#22
kwiechen
closed
5 years ago
1
Missing to scale stain concentration in VahadaneNormalizer??
#21
machisuke
closed
6 years ago
3
Edit contribution.md
#20
jgamper
closed
6 years ago
1
Python 2 compatibility
#19
Peter554
closed
5 years ago
2
SPAMS dependency / is spams lasso the slowest part in the whole thing?
#18
jgamper
closed
5 years ago
5
No such file or directory: 'VERSION'
#17
smujiang
closed
6 years ago
1
rename tests
#16
Peter554
closed
6 years ago
0
rename tests folder
#15
Peter554
closed
6 years ago
0
abc normalizer
#14
Peter554
closed
6 years ago
0
Create LICENSE
#13
jgamper
closed
6 years ago
0
moved rj to rj_utils, modified augmentors fetcher accordingly
#12
jgamper
closed
6 years ago
0
Abstract class for normalizers?
#11
jgamper
closed
6 years ago
6
Move RJ to normalizers
#10
jgamper
closed
6 years ago
5
added augmentors.py
#9
jgamper
closed
6 years ago
0
Reasoning behind using spams package for stain concentrations?
#8
jgamper
closed
6 years ago
1
I use your code ,But it does not have a good effect
#7
liuzhisheng1226
closed
6 years ago
6
How to preserve the normalized picture?
#6
wanghao14
closed
6 years ago
3
spams??
#5
liuzhisheng1226
closed
6 years ago
4
Error with division of zero in vahadane staining
#4
TuanDTr
closed
6 years ago
2
rgb-od and od-rgb
#3
Jingxin-LIU
closed
6 years ago
0
A bug??
#2
lily10086
closed
6 years ago
3
Can you update your image and give more about how to use it？
#1
liuzhisheng1226
closed
6 years ago
1