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I would like top propose the addition of marker gene expression assertions from analysis of the Human Lung Cell Atlas data to definitions of 52 existing CL terms with predicate skos:exactMatch. See a…
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## 🚀 Feature
A napari multicanvas view has been a long-requested feature that could be implemented in different ways.
There are two main approaches that we are interested in:
- grid mode: similar…
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Hi, @bmill3r
Sorry to trouble you. I'm new to analyzing spatial transcriptomes. I am trying to do it with your tools to deconvolve. I have two questions.First, I see the tutorial in “https://github…
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See #652 https://github.com/ga4gh/schemas/pull/652#discussion_r70047549
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Hi,
I have 51bp PE RNA-seq libraries from FFPE tissues.
The raw fastq shows considerable adapter contamination and some over represented sequences, mostly mapping to ribosomal gene sequences.
…
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Hello,
Is it possible to generate a good mesh when then input volume is not equilateral and padding is not used?
Let me expand;
- I am trying to make a mesh from a segmentation volume of size […
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Some common “main labels” like: man woman child person - could be picked out with grep.
I.e. any multi word free label containing “man” should be safe to reduce to “man”
(Counter example man-o-war .…
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@pli888 Focus the proposal on metabolic imaging?
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https://arxiv.org/abs/1802.10440
> Sepsis is a life-threatening condition affecting one million people per year in the US in which dysregulation of the body's own immune system causes damage to its…
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Hello,
I ran this data set on filtered output from Mutect2 (tumor vs normal, single patient with PoN of 4 samples). I got the mutation list by querying the vcf file from bcftools so I get the colum…