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Base calling, is the systematic assignment of nucleobases to chromatogram peaks in case of electrophoresis, current changes resulting from nucleotides passing through a nanopore in case of Nanopore se…
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**Describe the bug**
When providing barcoding summary files by parameter `-b`, I got this error:
```
Checking arguments values
Check input data files
Parse data files
Merge data
Traceback (most…
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I have fast5 files from nanopore sequencing, about 6% of them were identified as telomeric reads and I have them in a fasta file. I am not sure how to use the pipeline in order to fix basecalling erro…
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Hi!
I used Racon in the past and it run perfectly, but now I am running it with more nanopore data and I am running into trouble.
My nanopore reads (FASTQ) is 56.7Gb and my assembled genome is 887…
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I recently used Novoplasty to assemble the mitogenome from short read data of _Microtonus aethiopoides_ ecotypes. Although the process completed successfully, it did not produce any contigs. I initial…
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Hello
I am attempting to run the pipeline on my Mac using the docker profile. The process fails with the warning:
WARN: There's no process matching config selector: fastqc
The environmentl…
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when I used the nanopore data to map the Illunima raw data (150bp), the minimap2 was warnning as blow:
[WARNING] For a multi-part index, no @SQ lines will be outputted. Please use --split-prefix.
M…
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I have seen some differences in recall and precision with the big changes in the mpileup command in v1.13 with Nanopore data.
The first thing to say though is v1.13 is a massive improvement in term…
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Hi Developer,
Thank you for developing this good tool.
Is it possible to use purge_dups to get the best set of contigs from two different assembler?
For example, I got draft genomes of the same org…
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Hello, I am attempting to run the test data, and it fails at the metabat2 stage, with the following message:
```
nanophase meta -l mnt/databases/db/fastq/SRR17913199.fastq -t 24 -o nanophase-out
…