a-slide pycoQC issues - Githubissues

a-slide / pycoQC

pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)

https://a-slide.github.io/pycoQC/

GNU General Public License v3.0

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issues

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Discrepancies between ToulligQC and PycoQC

#151 sklages closed 2 months ago
0
dorado summary as input to pycoQC

#150 sahuno opened 3 months ago
4
PycoQC issue: Empty graph produced

#149 dlbowie0 opened 4 months ago
0
Info barcode analysis

#148 KristinaGagalova opened 8 months ago
2
pycoQC is still requiring plotly==4.1.0 -- any further development?

#147 sklages closed 7 months ago
1
pip installation doesn't work

#146 KristinaGagalova opened 9 months ago
0
Barcode_split on P2solo SQK-RBK114-24 data fails

#145 splaisan opened 10 months ago
0
stop analysis at a given time in the run

#144 splaisan opened 10 months ago
0
Fixed broken links from usage.md

#143 liujamin closed 10 months ago
0
bam test data

#141 bernt-matthias opened 1 year ago
4
seeking help on pycoqc output

#140 rezarahman12 opened 1 year ago
1
Generated summary file missing required column

#139 skchronicles opened 1 year ago
0
About passed read number

#138 wuy24 opened 1 year ago
0
Bug fix for Fast5_to_seq_summary for directories with 1 fast5 file

#137 godotgildor opened 1 year ago
0
PycoQC fails when fastq is trimmed using Pychopper.

#136 bernardo-heberle closed 1 year ago
1
stat for each file/barcode

#135 Hedi65 opened 2 years ago
0
plotly 5.7.0 error

#134 PrafulAggarwal opened 2 years ago
0
Q: Many empty plots

#133 sklages closed 2 years ago
3
Repo URL is dead

#132 ewels closed 2 years ago
2
AttributeError: 'Series' object has no attribute 'ptp'

#131 dan-ward-bio opened 3 years ago
9
Different number of reads by barcode

#130 valery-shap opened 3 years ago
1
Error when providing barcoding summary files

#129 zhxiaokang opened 3 years ago
1
Interval Unit in Output over time plot

#128 liscruk closed 3 years ago
2
is it possible to implement input as fastq reads and have output summary stats in tab separated txt/tsv?

#127 unique379r closed 3 years ago
1
is it possible to have output as tsv or tab separated txt file using summary and bam files ?

#126 unique379r closed 3 years ago
0
green read-length distribution plot for each barcoded sample

#125 wososa closed 3 years ago
1
Dev

#124 a-slide closed 3 years ago
0
Cannot install pycoQC on Ubuntu 20.04.1 LTS

#123 michielmuliergithub closed 3 years ago
7
Summary breakdown by runID within one sequencing summary file?

#122 callumparr closed 3 years ago
3
Dev

#121 a-slide closed 4 years ago
0
Can not install pycoQC (version 2.5.0.21) in anaconda

#120 xlinxlin closed 4 years ago
4
pycoQC.common.pycoQCError: Invalid sequencing summary file

#119 anastasiasatyr closed 4 years ago
2
Output -Bam files Phyton 3.7?

#118 Francisjpll closed 4 years ago
3
"run summary by barcode" section missing?

#117 inijman closed 4 years ago
2
No module named 'pysam.libchtslib

#116 ganiatgithub closed 4 years ago
4
Made Fast5_to_seq_summary work on multi-fast5 files

#115 snajder-r closed 4 years ago
3
Dev

#114 a-slide closed 4 years ago
0
How can I get Bam -alignment reports if I am not using human genome?

#113 hrpelg closed 4 years ago
4
AttributeError: 'Series' object has no attribute 'ptp'

#112 HamletShaoE closed 4 years ago
6
Cannot use alignment file as an input

#111 kaltinel closed 4 years ago
2
Add additionnal data to json report for MultiQC integration

#110 a-slide closed 4 years ago
0
Dev

#109 a-slide closed 4 years ago
0
transcriptome mode for post-alignment QC

#108 a-slide opened 4 years ago
2
Implement BRI instead of pysam for BAM reading

#107 a-slide opened 4 years ago
0
Many contigs in reference break pycoQC report html (bam analysis)

#106 Marc-Ruebsam closed 4 years ago
7
Fast5_to_seq_summary error

#105 apeltzer closed 4 years ago
8
Dev

#104 a-slide closed 4 years ago
0
Dev

#103 a-slide closed 4 years ago
0
min / max length filtering

#102 pgtb closed 4 years ago
2
No module

#101 Tdanis closed 4 years ago
6