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The `Disease` object references `OntologyClass` for [ICD-O values](https://github.com/phenopackets/phenopacket-schema/blob/d3c75d358d99c8d479a2d433a9ea39cf71ad592d/src/main/proto/phenopackets/schema/v…
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There is frequently a need to represent entities from a database as an ontology
See:
- [Limits of ontologies: How should databases be represented in OBO?](https://docs.google.com/presentation/d/…
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We currently use a number of dummy prefixes in the CCDH model:
```
prefixes:
linkml: https://w3id.org/linkml/
ccdh: https://example.org/ccdh/
NCIT: http://purl.obolibrary.org/obo/NCIT_
…
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Updated action items:
Before taking further action on this, we should get in touch with Sharon Plon and her team to inform her of these potential changes. Note to self - see email: Re: NCI Thesauru…
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we linked classes to nciT. link it too to snomed CT.
- which are URIs? is there an official owl2 version?
- use some property to refer to the concept ID? which property?
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Please review and confirm [mappings](https://docs.google.com/spreadsheets/d/1lXe7o8uALdoWL6QrBHia3aFjeVCcA4qRTLtwWCMJQ9Y/edit#gid=625993526) of GDC value sets to NCIT terms. Specific questions for GDC…
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Currently we have ICDO mappings souirced fro NCIT, of the form `ICDO:nnnn/n'
progenetix has more complete mappings
https://github.com/progenetix/ICDOntologies/tree/master/current
TODO: determin…
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Hi Ray,
here is an example sparql query to construct a nanopublication from source data:
Nanopublications construction QUERY:
PREFIX np: http://www.nanopub.org/nschema#
PREFIX rdfs: http://www.w3.o…
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For new term requests, please provide the following information:
## Preferred term label
time zone
## Synonyms
see bco-dmo.org/parameter/1012
## Textual definition
from http://purl.o…