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Hello! I am new to Radiomics and Segmentation. I have some dicom images depicting lung tissues. How can I manually segment the tissues and save a mask file for each dicom, in the supported format nrrd…
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It exists in FlyBase
http://flybase.org/reports/FBtp0060652.html
And we have a registered image
http://flybrain.mrc-lmb.cam.ac.uk/vfb/jfrc/fl/reformatted-quant//JFRC2_GMR_47H03_AE_01_08-fA01b_C…
mmc46 updated
7 years ago
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Hello there,
I am reading a segmentation (saved as .nrrd file) from Slicer to Matlab by using the nrrdread function
(SlicerMatlabBridge/MatlabCommander/commandserver/nrrdread.m)
However, the s…
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https://numpy.org/devdocs/release/2.0.0-notes.html
#Support for seven data type string aliases has been removed from np.dtype: int0, uint0, void0, object0, str0, bytes0 and bool8.
([gh-24807](htt…
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This is not an issue but more like a clarification.
We know Julia has really flexible axes / indexing system / coordinate system, as this [blog](https://julialang.org/blog/2017/04/offset-arrays) h…
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The `fit_average_densities` command takes an indirect input which is `realigned_slices_ccfv2.json` via `fit_average_densities_ccfv2_config.yaml ` (see https://github.com/BlueBrain/atlas-densities/tree…
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Input/output ports could be NRRDs. Module GUI could contain:
- path to Seg3D binary
- textedit for typing in Seg3D python commands directly.
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Look at
- http://www.esrf.eu/UsersAndScience/Experiments/Imaging/ID19/microtomography/MatlabTools
to import vol (raw binary) and process.
Probably [MappedTensor](https://github.com/farhi/Mappe…
farhi updated
4 years ago
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It can be found here in format .nrrd:
http://download.alleninstitute.org/informatics-archive/current-release/mouse_ccf/annotation/ccf_2017/
So far the resampling and aligning works well, but the…
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The vtk particle files do not load in the same space as the segmentations.