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Hello!
I'm trying to write an ome-zarr for a small-ish dataset — ~90MB compressed. Because it's much easier to share single files than folders I want to try using a [ZipStore](). However, when I us…
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Hey Jeremy, in #238 you mentioned:
> However, Neuroglancer currently only supports that if the dimension is unchunked, i.e. the chunk size is equal to the full extent of the dimension; for your exa…
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**Is your feature request related to a problem? Please describe.**
We need to look at Next-generation file formats (NGFF) (https://ngff.openmicroscopy.org/latest/) which use [Zarr](https://zarr.rea…
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Dear all,
Could you tell me please where can one get some sample NGFF OME Zarr 3D volume data (just space dimensions, volumetric data, no time and no channel, but WITH labels)? Possibly, latest ver…
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Hi there,
When running the cell segmentation task, the function requires a parameter called `ChannelInputModel`.
One could attach either `label` or `wavelength` as the input.
However, when execut…
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EDIT: The most compelling specific issue is now part of #448. This issue is now to track the broader discussion on how to proceed regarding:
1. scope setting: which use cases will be supported in fra…
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**NB** This workflow has been moved to https://github.com/IDR/mkngff_upgrade_scripts (main README)
Once a submission has been processed by BioStudies, it will become available at a URL like:
…
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idr0026-weigelin-immunotherapy
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If I right-click on a layer generated by this plugin, the following error message appears in the console:
error message
```bash
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d-v-b updated
1 month ago
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Several of the IDR studies are now also available on S3 see https://idr.github.io/ome-ngff-samples/. Note that some from the BioImageArchive are also available at https://uk1s3.embassy.ebi.ac.uk/bia-z…