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Hiya!
Thanks for such a wonderful package. I'm working with a lot of peptides that I order from GenScript. A lot of these have modifications or are non-natural amino acids (see [here](https://www.g…
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Hello, liu. Your work is insighting and very useful to my work on peptide discovering, will you please update the implementation for the hard-meta batch in the current repository?
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Hi,
The FDP calculation at the precursor level for from a proteogenomic search consisting >400,000 peptide precursor is resulting with only zero values. I am not able to figure out the issue here. …
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Greetings, dear colleagues,
I am a 5th-year student at Lomonosov Moscow State University.
I have **one question about OnionNet**: is it possible to use this neural network to predict "protein-pep…
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Dear Vadim
In the diann results, most of the Protein.ids are uniprot accession ids (from the fasta file I used), but some are accession ids combined by ";" . Some are combined with cRAP-***, I thin…
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**- Upload your log file**
(If a log file hasn't been generated, go to the 'Run' tab in FragPipe, click 'Export Log', zip the resulting "log_[date_time].txt" file to avoid truncation, then attach the…
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I have trouble in reproducing the experimental results in this paper. I use the same environment with that reported in your github.
And for each dataset I tried all the setting in config folder, and…
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Hi everyone
I am new to FlashFLQ and I try to use it to quantify my proteomics data. The identification was done with sage and MS2 Rescore. I tried to generate the generic table for FlashLFQ with the…
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Would it make sense to utilise PoET for binding affinity prediction (ic50 score) of short peptide sequences (8-16 amino acids)? If yes, do you have any suggestions/comments on how to do it? Is it poss…
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I have the same issue with this #1310 unable to resolve. The error happens when searching specific PTM modifications search, like below. I used TMT11 plex. The monoisotopic mass of 156.1151 on CHK and…