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- Describe the issue or question:
Question:
For label-free data, fragpipe offers to export MSSTATS compatible output ( which is really awesome ).
Do you think you could also support this for MSst…
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### Description of the bug
@jpfeuffer @timosachsenberg @daichengxin I found one dataset that we search using msgf, here the command:
```
#!/bin/bash -euo pipefail
MSGFPlusAdapter \
-protoc…
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We need to define how to best define peak annotations, keeping in mind that these need to work for profile and centroided spectra. The current [test implementation](https://github.com/lgatto/Spectrum/…
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This is a follow-up to one important aspect of #5323 (on Ubuntu 20.04):
> Intermittently, the "Save File" dialog will freeze up completely.
The freeze is triggered by trying to interact with the f…
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Hi,
I read with interest your document on the effect of the relative size of score distributions for real vs decoy hits. Shouldn't we expect that, since in most cases we are comparing the same observ…
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Hi,
It seems you can only define fixed modifications with calculateFragments().
Am I right? If not, how to do it?
I think a feature like this could be useful.
Posible ways of implementing this are:
1)…
adder updated
5 years ago
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When running SpectraST using the OpenMS Thirdparty Unix binary, it works, however it does not correctly annotate RT metavalues.
In fact for my data it annotates the same value as m/z for retention …
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Hey,
I am very eager to try out the newest casanovo version on some of our data. While the test MGF file works just fine, I keep running into the same error on our Orbitrap data (after MGF and mzML…
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This issue is intended to discuss and collect how we can transition to the novel ID data structure.
Eventually, we will have some replacement for the quant. data structures as well but it is unrealis…
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Hello,
I receive the following error when trying to use Sage (through SearchGUI) with multiplexed (TMT-10) files:
```
Fri Jul 12 20:55:05 UTC 2024 Importing spectrum files.
Fri Jul 12 20:55:…