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For instance 4.1.1
I do realize that you may need to freeze development for such a large project.
Thanks for your help,
Chris Park
cpark1@illlumina.com
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It was requested by a user at ESHG that we explicitly say which is the effect allele at the top of the variant page. Under "Location" in the "Variant Summary" section of the variant page, add:
```
…
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There are a couple of files which I cannot relate to any publicly available file published from the GWAS catalog or the Neale UKBB dataset needed for running the V2D pipeline.
Some files that are …
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The associated index variants table will be embedded within the variant page and will be **visible for tag variants**.
## Minimal API
Below is the subset of the graphql schema relevant to this tab…
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For example, search for the study “Marioni”, and then click the Compare Studies button, and choose to compare with “Jansen”. Click one of the Locus Plot buttons in the list below.
The Locus Plot pa…
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**Situation**: In an effort to resolve #1494, the variant index from the GeneticsPortal is used to generate a table with variant information, most severe consequences and the corresponding gene symbol…
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LUTs:
- [x] Use GRCh38 gene dict: `gs://genetics-portal-data/lut/homo_sapiens_core_96_38_genes.json`
- [x] Make sure that the tissue LUT is up-to-date
- [x] New display labels for variant page: `gs…
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Modify phewas function to default to batches:
- ieu-a
- ieu-b
- ukb-b
but allow users to change to include other batches
mcgml updated
2 years ago
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I would expect the same icon to go to the same page as it is confusing having two different buttons behaving the same but looking different.
![captura de pantalla -2018-10-09 11-48-42](https://user-…
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It will be useful to have an option `--phenoExclude` to exclude few phenotypes from phentoype file
```
-p, --phenoFile FILE phenotype file (header required starting with
…