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Dear Shifu Chen,
Great talk yesterday at ECCB2018! I have been playing around with fastp on my data already and I found that fastp does not crop the read but discards the too long read when using t…
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Note, https://github.com/tidyverse/dplyr/releases only contains dplyr 0.8.0.1 not 0.9
so
You can also perform this query using dplyr 0.9 installed through:
```
remotes::install_github("tidyve…
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**Describe the bug**
No error message when 'unknown' or typo flag is provided. The pipeline runs through 'ignoring' that flag which will produce incorrect output (or at least unexpected).
**To Rep…
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Shifu;
Thanks for this great tool and adding pre-processing for UMIs. I've been looking for faster options to replace our use of umis (https://github.com/vals/umis) for pre-processing UMI outputs and…
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Consider this GeoJSON (validated at http://geojsonlint.com/)
```r
js
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Running this code on BahnProvider yields a PARSE error on the reponse (!). According to the error description, the problematic JSON node is `root.svcResL.svcResL.res.outConL.outConL.secL.secL.type` bu…
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Dear Felix,
Thanks for making this awesome wrapper! I have two questions:
1) Is it also possible to use the cutadapt --nextseq-trim option from cutadapt? That would be great as I clearly have po…
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In our group we've noticed that we regularly get lots of poly G reads from NextSeq data which don't get discarded by the sequencer or demultiplexer. This can mess up some downstream statistics if not …
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Shifu;
Congrats on the paper in bioRxiv and thanks for all the great work on fastp. We've been working on improving the runtimes for somatic variant calling workflows and exploring quality and polyX …
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how is it possible to use fastp only for converting phred64 to phred33 score, not any trim or quality control?