-
I was working with the docker image, and kept getting the error `contig.fa is not a readable non-empty FASTA file`. I was using the following command as it is described in the readme:
`docker run s…
-
Dear Torsten,
it seems that a conflict occurs since blastp/makeblastdb v 2.10 since the perl routine recognizes 2.10
-
It seems **NOT**! but unfortunately, my previous work used **blast v2.10**.
I installed prokka several months ago, I didn't see there is a big update recently.
Anyway, hope you can give me some adv…
-
This is for annotation with KOs of a metagenomic project, sampled from many locations. I am looking to use the workflow:
assembled contigs -> Prokka -> proteins WITH reference to original contigs -> …
-
I beleive bohra 2.x is now modular.
Could bakta be added as an annotation option?
(instead of prokka)
It noe comes with a "light" database that is very small but covers 80% of genes.
-
Often we have a (prokka-generated) Genbank file, but only want to use a small subsection of it in Clinker. I don't know how easy it would be, but could an option be introduced to say xxxxx.gbk(133310-…
-
Hello,
I am trying to look at the upstream and downstream features around an AMR gene. I managed to get the block alignments but is there a way to get annotations from prokka into the plots? If yo…
-
The [GFF3 specification](https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md) states:
> *All attributes that begin with an uppercase letter are reserved for later use. Attri…
-
Hi,
I installed prokka use git, and when I execute "prokka assembly.fasta --force", I met the problem above. Then I reinstalled the tbl2asn from "https://ftp.ncbi.nlm.nih.gov/asn1-converters/by_prog…
-
I was looking to use FlaGs with some user annotated genomes using the -l and -ld commands (using prokka).
I noticed that the way FlaGs parses GFF attributes seems to be hard-coded in so that local…