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neherlab
/
pangraph
A bioinformatic toolkit to align genome assemblies into pangenome graphs
https://neherlab.github.io/pangraph
MIT License
77
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7
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minimap2 fix
#80
mmolari
opened
3 days ago
0
minor cli message changes
#79
mmolari
closed
1 month ago
0
Export not generating final tree
#78
brigidar
closed
1 month ago
9
graph reweaving
#77
mmolari
closed
1 week ago
0
added match filtering, and small addition to match splitting
#76
mmolari
closed
2 months ago
0
Rust marco dev
#75
mmolari
closed
4 months ago
0
fix: merge block test
#74
mmolari
closed
4 months ago
0
nextclade alignment tests
#73
mmolari
closed
4 months ago
0
fix: avoid frame shifts when applying insertions
#72
ivan-aksamentov
closed
4 months ago
0
fix: apply deletions without causing frame shifts
#71
ivan-aksamentov
closed
4 months ago
0
fix: minimap2 paf parsing
#70
mmolari
closed
4 months ago
0
fix: mmseqs paf parsing and added tests
#69
mmolari
closed
4 months ago
0
Incorrect E. coli sequences being represented by PanGraph (large dataset)
#68
TheHarshShow
opened
5 months ago
5
fix neighbor joining
#67
mmolari
closed
5 months ago
0
Rust marco dev
#66
mmolari
closed
5 months ago
3
Mismatching SARS-CoV-2 Sequences
#65
TheHarshShow
opened
6 months ago
3
chore(deps): bump tj-actions/branch-names from 6 to 7.0.7 in /.github/workflows
#64
dependabot[bot]
closed
7 months ago
0
Fix/issue 62
#63
mmolari
closed
7 months ago
0
Incorrect HIV Sequences being represented by PanGraph
#62
TheHarshShow
closed
7 months ago
6
Is there any plan to add annotations to the block/horizontal alignments?
#61
bhargava-morampalli
opened
8 months ago
2
fix export error
#60
mmolari
closed
10 months ago
0
Non-boolean error in pangraph export
#59
conmeehan
closed
10 months ago
8
fix: marginalize variable name
#58
mmolari
closed
12 months ago
0
Fix/issue 56
#57
mmolari
closed
1 year ago
4
Inaccurate output for Klebsiella pneumonia dataset
#56
sumit-walia
closed
1 year ago
6
feat: input file checks
#55
mmolari
closed
1 year ago
1
Unable to build pangraph
#54
sumit-walia
closed
1 year ago
4
fix: upgrade treetools version
#53
mmolari
closed
1 year ago
1
PanX export fails
#52
mmolari
closed
1 year ago
1
Paper reviews
#51
mmolari
closed
1 year ago
1
web
#50
ivan-aksamentov
opened
1 year ago
1
Feat/finalize paper
#49
mmolari
closed
1 year ago
0
added package for nextflow usage of docker image
#48
plaquette
closed
1 year ago
1
check input fasta file for records with same name
#47
mmolari
closed
1 year ago
2
remove warnings from root!
#46
PierreBarrat
closed
1 year ago
0
Feat/remove conda
#45
mmolari
closed
1 year ago
0
Integrate treetools
#44
PierreBarrat
closed
1 year ago
0
size of docker image
#43
mmolari
closed
1 year ago
0
chore(ci): ensure branch builds are not cancelled by tag builds
#42
ivan-aksamentov
closed
1 year ago
0
Feat/automate release
#41
mmolari
closed
1 year ago
0
Fix/version release
#40
mmolari
closed
1 year ago
0
Add --version argument
#39
ivan-aksamentov
closed
1 year ago
0
Automate release routine
#38
ivan-aksamentov
closed
1 year ago
0
add fasttree to docker
#37
mmolari
closed
1 year ago
0
chore(ci): deploy docs from git tags
#36
ivan-aksamentov
closed
1 year ago
0
chore(ci): build and deploy docs automatically
#35
ivan-aksamentov
closed
1 year ago
0
chore(ci): release container image when master branch is updated
#34
ivan-aksamentov
closed
1 year ago
0
Feat/finalize paper
#33
mmolari
closed
1 year ago
0
Bypassing ordering step
#32
sumit-walia
opened
1 year ago
4
Dockerfile/pangraph not building
#31
schorlton
opened
2 years ago
1
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